Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00191 ATGggagacgaggaggaggaggaggCGCTGCCGTGCGTAACCACCGTTTCCGGCCAATCAGCCTCGGCCACCaacgctctccgcaaattaaaccttcttgacatacacgccgatgatgccgctggcaagaagaaaaagagaggccaacgtgctgttggacctgataagactggaagaggtctccgccaatttagcatgaaagTGTGTGAGAAGGTAGAAAGCAGGGGAAGAACAACTTACAATGAGGTGGCGGATGAGCTTGTTGCTGAATTTTCTGATCCAAGCAATACTGATTTGACCCCTGATCAGCAACAATACGACGAGAAAAATATCCGTAGAAGGGTCTATGATGCTCTGAATGTTCTAATGGCAATGGATATTATTTCTAAGGACAAAAAGGAAATCCAATGGAAGGGTCTTCCTCGTACTAGTGTGAATGATATTGAAGAGCTAAAGACAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAAGAAAACAGCATATCTGCAGGAGCTTGAGGAGCAATTCGTAGGTCTTCAGAACCTTATTCAACGAAATGAGCAGTTATATAGCTCAGGAAATCCTCCTCGTGGAGGTGTATCTTTGCCGTTTATTCTGGTACAGACAGGTCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACCCCCTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTCTGAGAAACCACAGGATGACAATATGATACTCAATCTTAATGATGGAGGTGAAGGTTCTAGCGTTTCAGGCTTGTGTCAGCCACAGGCTCTTCCTACAATTTTAAATGTGTCAAATAGGTCTCCAACATCACCTCCTCTCCCTGGCATATTAAAGAGAAATTTGCTGCAGTTGTTAGACCGTTATAGTTAG 939 0.3578 MGDEEEEEALPCVTTVSGQSASATNALRKLNLLDIHADDAAGKKKKRGQRAVGPDKTGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSDPSNTDLTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKTERLGLRNRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPRGGVSLPFILVQTGPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFSEKPQDDNMILNLNDGGEGSSVSGLCQPQALPTILNVSNRSPTSPPLPGILKRNLLQLLDRYS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00191 312 Pfam E2F/DP family winged-helix DNA-binding domain 59 139 IPR003316 GO:0005667|GO:0006355
Cca04g00191 312 Pfam Transcription factor DP 147 255 IPR014889 -
Cca04g00191 312 MobiDBLite consensus disorder prediction 40 59 - -
Cca04g00191 312 PANTHER TRANSCRIPTION FACTOR DP 14 302 IPR015648 GO:0005667|GO:0051726
Cca04g00191 312 SUPERFAMILY "Winged helix" DNA-binding domain 59 140 IPR036390 -
Cca04g00191 312 Gene3D Transcription factor DP 145 263 IPR038168 -
Cca04g00191 312 SUPERFAMILY E2F-DP heterodimerization region 146 259 IPR037241 -
Cca04g00191 312 CDD DP_DD 144 247 IPR014889 -
Cca04g00191 312 SMART DP_2 146 306 IPR014889 -
Cca04g00191 312 PIRSF Txn_factor_DP 3 304 IPR015648 GO:0005667|GO:0051726
Cca04g00191 312 Gene3D - 52 144 IPR036388 -
Cca04g00191 312 SMART E2F_TDP_2 56 139 IPR003316 GO:0005667|GO:0006355
Cca04g00191 312 Coils Coil 155 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00191 Cca-Chr4 1751720 1755307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00191 20 259 E2F-DP Transcription Factor Family AT5G02470 49.378 8.62e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Cca04g00191 DP 5.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00191 K04683 - gmx:100798342 499.975