Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00190 ATGGATGCACCAAAGGATCATCAAAATGTTGCAACCATAGATGTCCATGCTGCCAAAGATCTTCTCAATTCATCTGGTTATCGTTATCTGGATGTTAGGTCAGTAGAGGAATTCAACAAAAGCCATGTTGAGAATGCTCTTAATGTCCCCTATATGTTCATCACAGAAGCTGGACGGGTGAAAAATCCAGATTTTGTTGACCAAGTGGCAGCAATATGCAAGAATGAGGATCATTTAATTGTGGCTTGCAATAGTGGAGGAAGATCACTCCGAGCCTCCGTTGATCTGCTTGATTCAGGATTTAAACAAATTGTTAACATGGGAGGAGGCTACTCTGCGTGGGTGGATGCTGGATTTGCCGGGAACAATCCGGGAGAAGAGATCAAAACTAGTTGCAAGTTCCGTCCAAGCGCAATCCACTGA 423 0.4374 MDAPKDHQNVATIDVHAAKDLLNSSGYRYLDVRSVEEFNKSHVENALNVPYMFITEAGRVKNPDFVDQVAAICKNEDHLIVACNSGGRSLRASVDLLDSGFKQIVNMGGGYSAWVDAGFAGNNPGEEIKTSCKFRPSAIH 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00190 140 Gene3D - 2 120 IPR036873 -
Cca04g00190 140 PANTHER PROTEIN HIGH ARSENIC CONTENT 1, MITOCHONDRIAL-RELATED 5 134 - -
Cca04g00190 140 SMART rhod_4 13 120 IPR001763 -
Cca04g00190 140 CDD RHOD 18 115 - -
Cca04g00190 140 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 9 119 IPR036873 -
Cca04g00190 140 ProSiteProfiles Rhodanese domain profile. 23 123 IPR001763 -
Cca04g00190 140 PANTHER THIOSULFATE SULFURTRANSFERASE 18 5 134 IPR044684 GO:0003824
Cca04g00190 140 Pfam Rhodanese-like domain 17 116 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00190 Cca-Chr4 1746908 1748568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00190 8 127 Sulfurtransferasese or Rhodanese AT5G66170 46.721 1.55e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00190 K22547 - gmx:100794624 265.774