Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00187 ATGGCAAGACCAACAGCAACAGCCCACATTTTCAAGTCAAAATTACCAGACATACCCCTCCCCAACAACGTCCTTCTCCACACATACTGCTTCCAAAAACTCCCCGAAATCGCCCACCGCCCATGCCTCATCGCCGGCGACAGAACCTACAGCTACGCCGAAACCCACCTCCTGTCGCGGAAGGTCGCCGCCGGCATGTCCAAGCTCGGCGTCCGCAAGGGCGACGTCGTCATGATCCTCCTACCCAACTCCCCGGAGTTCATCTTCTCTTTCATGGCGGTCTCCATGCTCGGTGCCGTGGCCACCTCCGCCAACCCCTTCTACACGGCCGCAGAGATCTCCAAGTACCTGGCCGCCTGCAAGCCGACGCTCGCGGTGACGGAGGCGGCCACCGTCCACAAGCTGGACATGGGGTGGGGCCTGAAGGCGGTGGTGACGGTGGAGGAGCCGGCGGAGAATTGCGTGAGGTTCTGGGATGTGGCAGCGGCGGACGAGAAGGAGGCTCCGGCGGTGGAGATATTCTGGGAGGATGCGGTGGCGCTGCCGTTCTCGTCGGGCACGACGGGGGTGGCGAAGGGGGTGGTGCTGACGCACAAGAGTCTGATGACGAGCGTGGCGCAGATGATGGAGGGAGAGAACCCTAACTTGTACATGACGGAAGAGGACGTTATTCTGTGCGTGCTTCCGCTGTTTCACATCTTCGCTATGCACTGTGTGATGATGTGTGGCCTGAGAGCGGGCAGCGCTATTCTGCTCATTCCTCAGTTTGAGATTAGGGCGTTGCTGGAGGCCATAGAGCGCCACAGGGTCACGGTGGCCATGGTGGTTCCACCTCTCATCATAGCCCTCACCAAGAACCCCGCCCTCCATCATTATGACCTCACCTCCATCCGCTTCGTCATGTCCGGTGCTGCCCCTCTCGGCCTCCAGCTCCAAGAGGCTCTAGCCAATATATTGCCCAACGCTATTGTCGGACAGGGGTACGGCATGACCGAGTCTGGCCCTGTCTTGTCCATGTGTTTGGGCTTTGCAAAGAAGCCATTGCCTACCAAGGTAGGCTCATGCGGAACAGTTGTAAGAAATGCAGAGTTGAAAGTAATTGAGCCTCAAACAGGTTTTTCTCTTCCACGTAACCACCCTGGTGAGATTTGCGTCCGTGGCCCTCAGATCATGAAAGGTTACCTCAATAACCCCCAGGCTACTGCAGCCATGATTGATGCACATGGTTGGCTTCATACGGGTGATATTGGCTACGTCGATGACGATGATCACATTTTCCTCGTTGAAAGATTAAAGGAACTCATCAAATTTAAAGGCTTCCAAGTGCCTCCAGCAGAACTTGAAGACCTTCTTATGAGCCACCCTTCCATTGCAGATGCCGCTGTTGTCCCCCAAAAGGACGATGTTGCCGGTGAACTTCCAGTGGCTTTTGTCGTCAGCTTTGATCTAACACTAACAGAAGAGGCTGTAAAGGATTTTATAGCTAAACAGGTAGTGTTTTACAAAAGACTACACAAAGTGCATTTTGTTCACGCAATTCCAAAGTCTATCACCGGAAAGATATTAAGAAAAGACCTCGTAGCAAAGATCGCCAGCATAGCTGAGAGGACCTAG 1614 0.5452 MARPTATAHIFKSKLPDIPLPNNVLLHTYCFQKLPEIAHRPCLIAGDRTYSYAETHLLSRKVAAGMSKLGVRKGDVVMILLPNSPEFIFSFMAVSMLGAVATSANPFYTAAEISKYLAACKPTLAVTEAATVHKLDMGWGLKAVVTVEEPAENCVRFWDVAAADEKEAPAVEIFWEDAVALPFSSGTTGVAKGVVLTHKSLMTSVAQMMEGENPNLYMTEEDVILCVLPLFHIFAMHCVMMCGLRAGSAILLIPQFEIRALLEAIERHRVTVAMVVPPLIIALTKNPALHHYDLTSIRFVMSGAAPLGLQLQEALANILPNAIVGQGYGMTESGPVLSMCLGFAKKPLPTKVGSCGTVVRNAELKVIEPQTGFSLPRNHPGEICVRGPQIMKGYLNNPQATAAMIDAHGWLHTGDIGYVDDDDHIFLVERLKELIKFKGFQVPPAELEDLLMSHPSIADAAVVPQKDDVAGELPVAFVVSFDLTLTEEAVKDFIAKQVVFYKRLHKVHFVHAIPKSITGKILRKDLVAKIASIAERT 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00187 537 Gene3D - 5 431 IPR042099 -
Cca04g00187 537 Pfam AMP-binding enzyme 39 437 IPR000873 -
Cca04g00187 537 Gene3D - 432 533 IPR045851 -
Cca04g00187 537 PANTHER 4-COUMARATE--COA LIGASE 3 9 529 - -
Cca04g00187 537 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 529 - -
Cca04g00187 537 ProSitePatterns Putative AMP-binding domain signature. 181 192 IPR020845 -
Cca04g00187 537 SUPERFAMILY Acetyl-CoA synthetase-like 20 532 - -
Cca04g00187 537 CDD 4CL 20 526 - -
Cca04g00187 537 Pfam AMP-binding enzyme C-terminal domain 446 520 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00187 Cca-Chr4 1725521 1727977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00187 7 444 Monolignol Biosynthesis Gene Families AT1G65060 61.174 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00187 K01904 - gmx:100790396 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00187 04 1725521 1727977 Cca04g00187 04 1725521 1727977 ECH