Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00179 ATGGCAGATTCCAAAAGAGTACCTTATAAGTCTATACTTCATAACACTCGATCCGAGAGAGTGATGATGGGTAGAACAGCATGGGGTGATGAAAGTGGTTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTACATTCAGAAACATGGGCATGGGAGTTGGAGAGCACTTCCAAAACTTGCAGGATTGAACAGGTGTGGCAAGAGTTGCAGGCTAAGGTGGACCAACTATTTGAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAGGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGTCTTCTATAGCAGGTCATCTGCCAGGTAGGACTGATAATGAAATTAAGAATTTTTGGAACACTCATTTAAAGAAAAAGCTTATGCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATCAGATCACCTTAATCTTCTATCCAATCTCCAACAATTGCTGGCTGCTACAAACATTTTCAGTAATTTCACCAACACTTGGGACATTAATGCTCTAAGCATGCAATCAGATGCCACACAACTAGCCAAACTCCAATTGCTTCAGAACATACTCCAAGTCCTTGGAGCCAATCCTACCTCAAACATGGAATTACTCAATCCTTTTGGACCACCATCTTCACTTCAAGATGGTTTTCTAAATGAAGTTTTAGGATTGAATCAATCTAAGCTCCAAGACCTTTGTAATGGTTTTCCTTCTCAAAATCAGCCAAATTTCCAAAACTTTGAAGCCCCTCCTCATCAGCAGCAAACTCTACCAAGTGGTTTTCAACACATGAGTGGATGTAGAAATAGTAGTTGCATGAAATCTGAAAAAGTTGAAGAACAACTTGATGCCCCTATTTCTTCTTCTTCTTCAACACAATTATTCAATTCACTTCCAAATCTAGTTTCAGCCTCGCCTGAATGTTCCACTGTCAAGCAAATGGAAAACAAGGGAAACACAAATGAGTGTTCTGACCCTTGTAATTCTACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAAGCGAGGCTTATTGGAAAGATCTCTTAGACCAAGAGTAA 1110 0.4036 MADSKRVPYKSILHNTRSERVMMGRTAWGDESGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHAVLGNKWSSIAGHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRSDHLNLLSNLQQLLAATNIFSNFTNTWDINALSMQSDATQLAKLQLLQNILQVLGANPTSNMELLNPFGPPSSLQDGFLNEVLGLNQSKLQDLCNGFPSQNQPNFQNFEAPPHQQQTLPSGFQHMSGCRNSSCMKSEKVEEQLDAPISSSSSTQLFNSLPNLVSASPECSTVKQMENKGNTNECSDPCNSTSTTFEMWGDFMYEEVSEAYWKDLLDQE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00179 369 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Cca04g00179 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Cca04g00179 369 PANTHER MYB TRANSCRIPTION FACTOR 25 368 - -
Cca04g00179 369 Gene3D - 35 88 - -
Cca04g00179 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Cca04g00179 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 25 368 - -
Cca04g00179 369 CDD SANT 91 134 IPR001005 -
Cca04g00179 369 SUPERFAMILY Homeodomain-like 33 130 IPR009057 -
Cca04g00179 369 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Cca04g00179 369 Pfam Myb-like DNA-binding domain 89 134 IPR001005 -
Cca04g00179 369 CDD SANT 38 83 IPR001005 -
Cca04g00179 369 Gene3D - 91 138 - -
Cca04g00179 369 SMART sant 88 136 IPR001005 -
Cca04g00179 369 SMART sant 35 85 IPR001005 -
Cca04g00179 369 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00179 Cca-Chr4 1646851 1648638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00179 23 367 MYB Transcription Factor Family AT5G16770 49.721 3.56e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g00179 Myb_DNA-binding 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00179 K09422 - gmx:547488 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00179 04 1646851 1648638 Cca04g00179 04 1646851 1648638 ECH