Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00174 ATGAGAGATATTTGTCGAAACTTTCAGCGTGGCAGCTGTCAATACGGAGAAAGATGTAGATACTTACATGTCCAGCAACAGAGAAAACCTAATGCTCATGGGTTTGGAGGACAGAACAGTTCCCATCAACAGCAAAATACAAATCCTTTtgggtttgggtctcactctggctctggctttggctcGCAACAACAGCAGAAGACTAATAATCCTTTTGGTTTTGGCACGCACAACAGCTCCCAGTTAAATGGGGGGAACCAATTCAAGCCTTTTGAAAACAAATGGAGTCGACAGTCATCCAAACCCCAAAATGGTGTTTCTCGCCAATCTAATAACAACTCCCAACAAGTGGATCATAAATGCACAGATCCTGAGAACTGTAAGCGGCAGATTGCGGAAGATTTGGGCCAAGAGAAACCGATTTGGATACTTACATGCTATGCTCATTGCAAAGGTGCTCCTTGTGACATTGTCGGTGATATTAGCTATGAAGAATTGCGGGCATCAGCCTATGAGGATGCTAAAAATGGGATGAGCTTGCCATCAATAGTTGAGAAAGAGAGAAATATACTAAAATCCAAGTTGGTTGATTTTGAGAAACTACTTTCTGAACCCTACAAAATGCCAATCAATTCTTCTCTTGACCATCAAAAACACCAAACTGTTGGAGCCAATGCAAATCCATTTTCAATAACTTCTCAAAATAATGGTCCTTTGTCAGTCTCAAGCTTTAGTCAACTGGGTACTTCATTAAACATGGGTTTTGAAAGGCCTTCTGCACCACCAACGAACACTCTGGCGCAACCTAGTTTCTTTGGAAGTGGAGTAAATCTAGGCAGCAGTGGTGTCTTTGGTGCTCAAAGCATCCCCTATTCTGCACCGGTGGAGTCAACAATGTTTCCGGGTTCAACTCAGCAAACATCTGTTGCCTTCAATAACTCTGGAGCCACTACAATGTTTCAAACAACACCAGATGTTCAGTTGTCAAATAAGTTGAAAGTTGAGAATGTGCCGGGAGAATTCACTATTTGGATGCAAGAGACATGGAATCCGGGAGAGATTCCAGAAGAAGCTCCTCCCGATGCCTATATACGATAG 1098 0.4089 MRDICRNFQRGSCQYGERCRYLHVQQQRKPNAHGFGGQNSSHQQQNTNPFGFGSHSGSGFGSQQQQKTNNPFGFGTHNSSQLNGGNQFKPFENKWSRQSSKPQNGVSRQSNNNSQQVDHKCTDPENCKRQIAEDLGQEKPIWILTCYAHCKGAPCDIVGDISYEELRASAYEDAKNGMSLPSIVEKERNILKSKLVDFEKLLSEPYKMPINSSLDHQKHQTVGANANPFSITSQNNGPLSVSSFSQLGTSLNMGFERPSAPPTNTLAQPSFFGSGVNLGSSGVFGAQSIPYSAPVESTMFPGSTQQTSVAFNNSGATTMFQTTPDVQLSNKLKVENVPGEFTIWMQETWNPGEIPEEAPPDAYIR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00174 365 PANTHER MAKORIN-RELATED 62 363 IPR045072 -
Cca04g00174 365 PANTHER MAKORIN-RELATED 2 67 IPR045072 -
Cca04g00174 365 MobiDBLite consensus disorder prediction 30 122 - -
Cca04g00174 365 MobiDBLite consensus disorder prediction 31 120 - -
Cca04g00174 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 25 IPR000571 GO:0046872
Cca04g00174 365 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Cca04g00174 365 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 62 363 - -
Cca04g00174 365 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 67 - -
Cca04g00174 365 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Cca04g00174 365 Gene3D - 1 68 - -
Cca04g00174 365 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca04g00174 zf-CCCH 5.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00174 K14321 - gmx:100814339 550.051