Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00173 ATGGGAGGTTTCAATGAAGAAGAAGGTGGTGTTGTGGGAGAAAAGCTTAAGGAAGAAGAAAATAAGTGGCCTTCATGGCTTCAGCCACTTCTCAAGACAAGCTTCTTTGTTCAATGCAAAGTCCACGCAGATTCCCACAAGAGTGAATGCAATATGTATTGCTTGGACTGTGTCAATGGAGCCCTTTGTTCTGCATGTCTCTCTTCCCACAAAGAGCACAGAACAATTCAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTGTCTGAGATACAGAAATTTCTGGACATAACAGGGGTCCAAACTTACATTATTAACAGTGCCAAGATTGTGTTCTTAAATGAAAGGCCCCAACCTAGGCCTGGAAAAGGGGTCACCAATACCTGCCAAGTCTGTGAGCGTAGCCTCCTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGCAAGGtatatatctatctatatcaatctatctatctatatatTAAAAAGTTCTTAACTACATCTTTGAATTAA 516 0.3973 MGGFNEEEGGVVGEKLKEEENKWPSWLQPLLKTSFFVQCKVHADSHKSECNMYCLDCVNGALCSACLSSHKEHRTIQIRRSSYHDVIRVSEIQKFLDITGVQTYIINSAKIVFLNERPQPRPGKGVTNTCQVCERSLLDSFSFCSLGCKVYIYLYQSIYLYIKKFLTTSLN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00173 171 Pfam PLATZ transcription factor 79 150 IPR006734 -
Cca04g00173 171 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 13 150 - -
Cca04g00173 171 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 13 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00173 Cca-Chr4 1590755 1593006 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Cca04g00173 PLATZ 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00173 - - gmx:100810888 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00173 04 1590755 1593006 Cca06g01945 06 34707772 34710619 ECH
Cca04g00173 04 1590755 1593006 Cca04g00173 04 1590755 1593006 ECH