Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00167 ATGTCGACCCCATTTTCGCAGCACATGGATGCCGCTGACAACAACAACCCTAAGGATTATTACAAAGTGCTGGAGGTTGATTATGATGCAACTGATGAGAGTATCAAATTTAATTACCGAAGACTTGCGCTGAAATGGCATCCTGATAAGCATGGAGGTGACAGTGCTGTTACTGCAAAATTTCAAGAGATAAATGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTTTGGACTATGATTTAACTGGGGTATGTGAGATTGAAAAATATAGCTTGCAGGAATATCTTGCCAGATTTAAAGGCATGATTCTTACCTGCAATGGACTTGGTATCAATCAAACAGACAGATGGTCACAACAATTGATTGAAAATTTTGAATCCCTAGATAAGTAA 396 0.3864 MSTPFSQHMDAADNNNPKDYYKVLEVDYDATDESIKFNYRRLALKWHPDKHGGDSAVTAKFQEINEAYNVLSDPAKRLDYDLTGVCEIEKYSLQEYLARFKGMILTCNGLGINQTDRWSQQLIENFESLDK 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00167 131 Pfam DnaJ domain 19 81 IPR001623 -
Cca04g00167 131 ProSitePatterns Nt-dnaJ domain signature. 61 80 IPR018253 -
Cca04g00167 131 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 9 123 - -
Cca04g00167 131 PRINTS DnaJ domain signature 21 39 IPR001623 -
Cca04g00167 131 PRINTS DnaJ domain signature 39 54 IPR001623 -
Cca04g00167 131 PRINTS DnaJ domain signature 56 76 IPR001623 -
Cca04g00167 131 PRINTS DnaJ domain signature 76 95 IPR001623 -
Cca04g00167 131 SMART dnaj_3 18 76 IPR001623 -
Cca04g00167 131 Gene3D DnaJ domain 2 97 IPR036869 -
Cca04g00167 131 SUPERFAMILY Chaperone J-domain 16 104 IPR036869 -
Cca04g00167 131 CDD DnaJ 19 73 IPR001623 -
Cca04g00167 131 ProSiteProfiles dnaJ domain profile. 19 84 IPR001623 -
Cca04g00167 131 PANTHER DNAJ PROTEIN-LIKE 9 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00167 Cca-Chr4 1548220 1552609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00167 9 81 C2H2 Transcription Factor Family AT1G74250 39.744 6.85e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00167 - - gmx:100527491 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00167 04 1548220 1552609 Cca04g00167 04 1548220 1552609 ECH