Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00166 ATGCCAAAAATCCCACAAGTTATTACATGCAAAGCTGCGATATGCTGGGGGATAGGAAAACCAGTGACGGTGGAAGAGATAGAAGTAGAGCCACCAAAAGCAACAGAAGTTCGAGTTAAGATGCTCTGTGCCAGTATATGCCACACAGACATCTCAGGCACAAAAGGATTTCCACATACCAATTTTCCTATTGCACTTGGACACGAAGGAGTTGGTGTTATAGAGAGTGTTGGTGATCAAGTGACAAATCTGAAAGAAGGGGATGTGGTAATTCCCACGTACATAGGCGAGTGTCAAGAATGTGAGAATTGTGTTTCAGAAGAAACCAATTTGTGTGTGACATACCCGGTTAGATGGACCGGTCTACAGCCAGATAACACTTCAAGGATGTCCGTCCGAGGACAGAGGCTATATCATATTTTAAGTTGTTCTACATGGTCAGAGTACATGGTTAGTGATGCCAACTATGTTCTCAAGGTTGAGCCAACCATTGATCCAATCCATGCCAGTTTCATCTCATGTGGCTTTTCAACTGGTTTTGGAGCCGCTTGGAAGGAAGCCAAGGTTGAAAGTGGATCCATTGTAGCCGTTTTTGGTCTCGGGGCTGTTGGATTAGGGGCTGTAATTGGAGCCAAAATGCATGGAGCAACCAGGATAATTGGAATTGATACAAATGAGAAGAAGAGAGAAAAAGGAGAAGCTTTTGGAATGACTGACTTTATAAATCCTAGTGATTCTGATAAATCTACTTCAGAATTGGTCAAGGAACTGAGTGGTGGAATGGGTGTGGACTATTCATTTGAGTGTACTGGAGTTCCAACCTTAATCACTGAATCTTTGGAAGCAACAAAAGTTGGAACAGGTAAAGCAATAGTAATTGGTGCAGGAACTGAACCTATTTTGCCATTGGGTCTTTTGGCCATTCTGCTTGGTAGAACTCTGAAAGGTTCGATTTTTGGAGGCCTTAAAGCCACATCAGATCTTTCCGTTATAGCTAACAAATGCCACAAAAAGGAATTCCCTCTTCAAGAACTCTTCACACATGAGGTCAGTTTGGGAGATATACACAAAGCATTTGAGCTAGTGAAACAACCCAATTGTGTGAAAGTTGTCATCAACATGTCATAG 1128 0.4229 MPKIPQVITCKAAICWGIGKPVTVEEIEVEPPKATEVRVKMLCASICHTDISGTKGFPHTNFPIALGHEGVGVIESVGDQVTNLKEGDVVIPTYIGECQECENCVSEETNLCVTYPVRWTGLQPDNTSRMSVRGQRLYHILSCSTWSEYMVSDANYVLKVEPTIDPIHASFISCGFSTGFGAAWKEAKVESGSIVAVFGLGAVGLGAVIGAKMHGATRIIGIDTNEKKREKGEAFGMTDFINPSDSDKSTSELVKELSGGMGVDYSFECTGVPTLITESLEATKVGTGKAIVIGAGTEPILPLGLLAILLGRTLKGSIFGGLKATSDLSVIANKCHKKEFPLQELFTHEVSLGDIHKAFELVKQPNCVKVVINMS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00166 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Cca04g00166 375 Gene3D - 179 317 - -
Cca04g00166 375 CDD liver_alcohol_DH_like 8 372 - -
Cca04g00166 375 Gene3D - 14 369 - -
Cca04g00166 375 Pfam Zinc-binding dehydrogenase 202 322 IPR013149 -
Cca04g00166 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 333 IPR036291 -
Cca04g00166 375 PANTHER ALCOHOL DEHYDROGENASE 5 373 - -
Cca04g00166 375 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Cca04g00166 375 SUPERFAMILY GroES-like 5 194 IPR011032 -
Cca04g00166 375 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00166 Cca-Chr4 1535382 1538027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00166 35 328 Monolignol Biosynthesis Gene Families AT2G21730 27.393 5.98e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00166 K00121 - gmx:100500200 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00166 04 1535382 1538027 Cca04g00166 04 1535382 1538027 ECH