Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00164 ATGATTCAGAACGCTGATATGAGACTCGAATCAGGGACTTGTAATGTGTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCGAGCTCACATGGGGTCAAAAGCTGAAGAATTTTCTGATGAAAACTGTCGCTTAGGGGAGGCTAATCAGCATTGCACTGACAAGGGTGATAGATCTTCTCTTAGGAGCAGAGCGTGTGAAAGATTGAAGCATGCTGTCAGTGAAACCAGTCACATGACTAGTGTTTCTTCTATTCATGATTCTCTATCTGAAGATGCTGAGAATAGACGAGCCTTATCAGAGAGGTATCAGGATTCCAAGTATTTAGAAAGTCTTGACAATAGCACTTGTATCAGTAGGACCAGTAATGCTAATTTAGTGAACAGTAGTCATCAAATAAATACAGATAGAGTAAACATTTCTTGTAGTTCAACTTCAATTAGTCACTTAGGGGCAGAAGGATCTGGAAATGGGCCATCTGTTGACATGTTGCCAGAATGCTATATGGAAAATGTGGGTTCATCAGTGACCAAAGAGAGAGTACCTATTATTGTTCCTGGTGAAAAATCTCTGGCAGATAAGGAAAACCTAAATAACAGCACAGCCGAGAATTCAATAGGAATATCTCCAAAGTCAGAAGCAGATACTGAAAATAATGTTGATGTTGCTAAAGACAAAGATCATAAATATTCAGCCCGTGATGGACTGCATGAGAAGGTTGAGGAGCTGGTTAAATCACCTGGCAGGGCTGAACCTCAGTCAGAAGACGAGAGTGACGAATCAGATGTTGTTGAGCATGATGTGAAAGTATGTGACATCTGTGGAGATGCTGGTCGTGAGGATCTACTTGCCATATGTAGTAGGTGCAGTGATGGTGCAGAGCACACCTACTGCATGCGAGAAATGCTTGAGAAGGTCCCTGAAGGGGACTGGTTATGTGAAGAATGCAAGTACACAGAAGAGACTGCAAATCGAAGGCTAGATATTGAAGGGAAAAAAATTCATAAGGTTTGTTCAACTTCACAAACTCCTGGCAAAAGGCCTTCTGAAAGCATAGAAATAGCTACAGCAGCTAAAAGGCAAGCTCTTGAATCGAGCACAGGATCACCAAAGGCATCAAGCCCCAAGAGAATAAGTCCACTATCACGCGAATCTTTGCTCAAGAACGTAGATAATGGAAAGTTGAAATCTGGTCAACAGATCCCCATGCGTAACCACCTTGGTGGTGATGACAAAGAACTTACTCGTTCTATTTCCACTGGCCCTCGGAGTCAAAATGCAAGGAGTACGTTGTTGAAGTCTAATTCATTCAACAACTTCAATTCCAAGCCAAAAGTCAAACTTGTTGATGAAGTTGTTCCCCAAAAGCATAAAGGGGGTGTCGAACATATTTCTAAGAATATGGAGACACCTTCTAGGATGATAAGCAAATTAATGTCATTTAAATCCTCAAATTTGGGTCGTTCAAGTGCTATTGAATCAAAAGTTAAAATGCTTTCTTCCAAGCCTGGAACTGCTCAGGATTTGAAAGCATCAAGACATGCAAAAGAATCAGGTTCATTTGACAGGAGATTTCTGTCTAAGATTGATCGGCCTGTCATTCGTTCAACCATGGATAGTTCTGTTGTATCTACATCAAAGGGTGATCAGAAGCATACACCACGTGGTGAAACTGCTAAACCTTCTACAGTTAACAACAATAGAGAGTTTAAGGTCACCCAAGATGGAAAATTATATTCAGTATCTAAGTCTAGCAGCACTAAAAGTCCAGAACCGCAAGTTAGTTCAGATAAAACATCGACCAATGTTGATGAAACTCAACAGGATAGGTTGCCTCGACCACAGGAGATATCTAATCAGGTCGACAAAATCAAAGATAGTTCTAGTGATCGTGTGAGGTCAGGTATTACTAATGCATCAAAAAGCTCATTCTGTTGTAAATGTAAAGATTTTGGCCATGCTACAGAATGTTGCACAAATAGTGGTACACATGAATTTGGTGCTGAAGCATCAGTCACTGCCACAAGTAGTTCAAAAGTGATGCATAAAGGAAACAAATTGAAAGCTGCAATCCAGGCAGCTTTGCTTAGAAGGCCTGAAATACACAAGAAGAAAGAAGCTCCTGATCAAACTAATGACTTTCCTACATCAAGCAAATTGAAATGTGAAGTCACCTCTCAAAACCAAGTGTTGGTTTCCAACACATTGAAAACTAGTATATCTGTTGAAGAAACCAATGTAAAGCAGGAAATCATTGAGACTTCTACTCTTGAAGCCTCCAAATGTCCATCTGCAAATGATTTGAAGCAACTTTGTCAAACTGAGTTTTGCTCTCAGCTGAGCAAGTCAGATTCTGTTGGTCTCACTTCTGGAAAGCCTGTAGTGAGAGACTTGCCCATTAATGACTTGGCAATGTCAAGTGTTCTTTCAAAGATGTCAGTTTTTCCAGAATACGAGTACATATGGCAGGGTGTCTTTAAAGTGCATAGAAACGGAAAGCCTCCTGACTTGTATACTGGAATTCAAGCACATTTATCCGCGTGTGCTTCCCCCAAGGTTGTTGAGGCGGTGAAATTTTTTTTACCTGAAGTTGCCCTGAATGAAGTTTCTCGTTTGAGCACATGGCCTTCACAATTTCATCAAGGTGGTGCCAAGGAAGATAATATTGCACTTTACTTCTTTGCAGAAGACATTGAAAGTTATGAAAGACACTACAAGGGTCTATTGGATCACATGATTAGAAATGATTTAGCACTTAGGGGGACCCTTGATGGTGTTGAACTTCTCATATTTGCATCCAATCAGCTTCCAGAAAATTCTCAACGTTGGAATATGTTATTTTTCCTATGGGGTATATTTAGAGGGAGGAGGATCAATAATTCAGATTCAGCAAAAAATATATGTATTCCCAGTTTGAATGTGATGCCAAATGAGAAGGATTTTCCTACTGCTGTCATGACTTTGTCTGAAACTCGGTGTTCACTGAAGCGCATGGATGAAGATTCCATTGACCAAGGTCACAATACGATAAGTAGGAATTTTGATAGCAAAGAAACTATTTTTGACCAGGCACATCTGGGTTTGCAAGTAAATTTAGAGAGACAAGATAGTAGAATCAACATCAAATCTACACCAGGGATCCCGACCACTGGTACCCACTCGTGTCAAGAAATGAATCCTGCTGGTTCGTCTCTGAGAGATAGTGTACCAGAGCATCGACAATACACAGAGTCTAAACCTCCTGAAGCAATGGGAACTGGTGTAAGTAGTAGGATTGTGGAAACAAAAATTAATTACAATATTTCTGTTAAGCAAGAGAATTCTTTGTCTTCGGGGATCCCTTCTGTTGGATGCCAGGAGATAGACACTGCAACGAATATCAGTATGGATGAAATTTTGGAGACAACAAACAATGATGAAAATCAACGAAGGCCTAAAAGGAAACAGATGGAAGATGATATCGATATTAACATGGAGGCAAAGGGAGACCCGACTGTGAAAGGGGTCAACTGTCAGCTCCCTAATGACAAAAAAGTTCAGCATATAGATCTTTCTTATACATCTGTGGAGGCAACTACAGGCAGTTGTCAGAAAATGCCTTGGAATGAGGTAAACGGCAAATTGGAAGACACAGAAAGTTCTTGCAAGAAGCTGCAAACAGGTTTTGGTGGAATTTACGGATGTTACAATCCCGGAGCCAGAGGATCTTTTAATGGCAGTTTTGCATCACTTGTAAATGATTTTGGTTCCTGTTCTTCAGTTGAGGACAAAGGGTGCAAAGAAGCTTGTGATGAGAAAATCATCCACGAGGACTTTGGAACGAAGGAAAGAACCTTCTTTCCTGTCGATACTTGTAATAAAAATGTCTCAGGGACGGTGCTGAATAGTGAGTCACTGAATGGGCATCATGAGTACGTGGACCAATTTCAAGTTGGGATTCCAAATCTAGAGCTTGGTTTGGGGTGCGAAACGAAAGCGTCACACAATAGTATGCTGCCTTTCTTTGTTGACAGGAAAAATAACCAGGAAAAGAGTCCAGATGAGCGAGACGACGAGAGCGTTGCTGCATCTCTCTCCCTGTCTCTATCCTTTCCATCTTCCAACAAGGAACCTGTTTCAAAAACTGAGCCTTTGCCTGATGTGAATCCGTCGTTTCTCCTTTTTGGGAGATTGACGGGCAAATAA 4188 0.4093 MIQNADMRLESGTCNVCSAPCSSCMHLNRAHMGSKAEEFSDENCRLGEANQHCTDKGDRSSLRSRACERLKHAVSETSHMTSVSSIHDSLSEDAENRRALSERYQDSKYLESLDNSTCISRTSNANLVNSSHQINTDRVNISCSSTSISHLGAEGSGNGPSVDMLPECYMENVGSSVTKERVPIIVPGEKSLADKENLNNSTAENSIGISPKSEADTENNVDVAKDKDHKYSARDGLHEKVEELVKSPGRAEPQSEDESDESDVVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLEKVPEGDWLCEECKYTEETANRRLDIEGKKIHKVCSTSQTPGKRPSESIEIATAAKRQALESSTGSPKASSPKRISPLSRESLLKNVDNGKLKSGQQIPMRNHLGGDDKELTRSISTGPRSQNARSTLLKSNSFNNFNSKPKVKLVDEVVPQKHKGGVEHISKNMETPSRMISKLMSFKSSNLGRSSAIESKVKMLSSKPGTAQDLKASRHAKESGSFDRRFLSKIDRPVIRSTMDSSVVSTSKGDQKHTPRGETAKPSTVNNNREFKVTQDGKLYSVSKSSSTKSPEPQVSSDKTSTNVDETQQDRLPRPQEISNQVDKIKDSSSDRVRSGITNASKSSFCCKCKDFGHATECCTNSGTHEFGAEASVTATSSSKVMHKGNKLKAAIQAALLRRPEIHKKKEAPDQTNDFPTSSKLKCEVTSQNQVLVSNTLKTSISVEETNVKQEIIETSTLEASKCPSANDLKQLCQTEFCSQLSKSDSVGLTSGKPVVRDLPINDLAMSSVLSKMSVFPEYEYIWQGVFKVHRNGKPPDLYTGIQAHLSACASPKVVEAVKFFLPEVALNEVSRLSTWPSQFHQGGAKEDNIALYFFAEDIESYERHYKGLLDHMIRNDLALRGTLDGVELLIFASNQLPENSQRWNMLFFLWGIFRGRRINNSDSAKNICIPSLNVMPNEKDFPTAVMTLSETRCSLKRMDEDSIDQGHNTISRNFDSKETIFDQAHLGLQVNLERQDSRINIKSTPGIPTTGTHSCQEMNPAGSSLRDSVPEHRQYTESKPPEAMGTGVSSRIVETKINYNISVKQENSLSSGIPSVGCQEIDTATNISMDEILETTNNDENQRRPKRKQMEDDIDINMEAKGDPTVKGVNCQLPNDKKVQHIDLSYTSVEATTGSCQKMPWNEVNGKLEDTESSCKKLQTGFGGIYGCYNPGARGSFNGSFASLVNDFGSCSSVEDKGCKEACDEKIIHEDFGTKERTFFPVDTCNKNVSGTVLNSESLNGHHEYVDQFQVGIPNLELGLGCETKASHNSMLPFFVDRKNNQEKSPDERDDESVAASLSLSLSFPSSNKEPVSKTEPLPDVNPSFLLFGRLTGK 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00164 1395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 330 IPR013083 -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 359 428 - -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 195 217 - -
Cca04g00164 1395 SMART PHD_3 271 318 IPR001965 -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 361 381 - -
Cca04g00164 1395 PANTHER - 7 1159 - -
Cca04g00164 1395 PANTHER - 1162 1383 - -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 195 219 - -
Cca04g00164 1395 SUPERFAMILY FYVE/PHD zinc finger 258 322 IPR011011 -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 78 99 - -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 538 634 - -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 1363 1385 - -
Cca04g00164 1395 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1162 1383 - -
Cca04g00164 1395 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 1159 - -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 1045 1064 - -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 558 616 - -
Cca04g00164 1395 ProSiteProfiles Zinc finger PHD-type profile. 269 320 IPR019787 -
Cca04g00164 1395 MobiDBLite consensus disorder prediction 1045 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00164 Cca-Chr4 1517508 1527129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00164 268 329 C2H2 Transcription Factor Family AT3G01460 33.871 3.07e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00164 04 1517508 1527129 Cca06g01949 06 34727607 34737366 ECH
Cca04g00164 04 1517508 1527129 Cca04g00164 04 1517508 1527129 ECH