Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00162 ATGAACAGCAGTGGCGGAGGGACTTTGATGGGTTTGAGTAACAGTTATGGCAGGTCCCCATTCACAGTGTCTCAGTGGCAGGAACTGGAACACCAAGCTTTGATCTTCAAGTACATGGTTGCGGGTCTTCCTGTGCCTCCTGATCTCGTGCTCCCCATTCAGAAGAGCTTCGATTCTCTCTCACACGGCTTCTTTCACCATCCCACACTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGATCCAGAGCCAGGACGATGCAGGAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTTTGACACAATCATCTTCAACTGTGACATCACTCACTGTCACCGGTGGCAGCAGTGGAACCCTAAACTTTCAGAACCTTCCCGCAAATGCCTTTTGTAATCTCCAGGGTACTGATTCCGGAACCGACCAAACCAATTATCGTTTAGATTCCATTCCCTATGCGATTCCAAGTAAAGAATACAGGTATCTTCAAGGACTTAAATCTGAGGGGGGTGAGCATTGCTTCTTTTCTGAAGCTTCAGGAAGCAACAAGGTTCTCCAAATGGAATCACAGTTGGAAAACGCATGGCCTTTGATGTCAACCAGAGTTTCCTCTTTTTCTACATCAAAGTCAAGTAATGATTCCATGTTGCATAGTGATTATCCCCAGAATTCATTTTTATCGGGGGAATATGCATCGGGAGAACATGTTAAGGAGGGCCAGCATCTTCGACCATTTTTTAATGAATGGCCTAAACGTAGGGAGCCATGGTCTGGTTTGGAAGATGAGAGATCCAACCAAACAGCCTTCTCGACAACTCAACTCTCAATATCCATTCCTATGTCTATGTCTTCTGACTTCTCTGCAATGAGCTCTCAGTCCCCAAATGATAACTGA 978 0.4663 MNSSGGGTLMGLSNSYGRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSLSHGFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTLTQSSSTVTSLTVTGGSSGTLNFQNLPANAFCNLQGTDSGTDQTNYRLDSIPYAIPSKEYRYLQGLKSEGGEHCFFSEASGSNKVLQMESQLENAWPLMSTRVSSFSTSKSSNDSMLHSDYPQNSFLSGEYASGEHVKEGQHLRPFFNEWPKRREPWSGLEDERSNQTAFSTTQLSISIPMSMSSDFSAMSSQSPNDN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00162 325 SMART QLQ_2 19 55 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca04g00162 325 PANTHER - 17 316 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca04g00162 325 MobiDBLite consensus disorder prediction 122 138 - -
Cca04g00162 325 MobiDBLite consensus disorder prediction 111 138 - -
Cca04g00162 325 Pfam QLQ 20 54 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca04g00162 325 ProSiteProfiles WRC domain profile. 81 125 IPR014977 -
Cca04g00162 325 ProSiteProfiles QLQ domain profile. 20 55 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca04g00162 325 PANTHER GROWTH-REGULATING FACTOR 5 17 316 - -
Cca04g00162 325 Pfam WRC 82 124 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00162 Cca-Chr4 1492277 1495186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00162 9 124 GRF Transcription Factor Family AT3G13960 61.290 7.15e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca04g00162 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00162 - - gmx:100787226 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00162 04 1492277 1495186 Cca04g00162 04 1492277 1495186 ECH