Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00160 ATGGCACCGTTTCGGAGTGTTTCTGATTCGATGCCTCCGTCAACAACACCCGAAGTCATAGAGAACGATCTTCAGCCATTCTTTGTTCTTCATAAAGCTTCATTCCGGAGAAAAGATAGAGCACCAACAGCACAGGCAAAATTGTGCAAGAGAAGTAAGTTATCTTCATCATCACCTGAAAGTGTGAAGCAACTGGAAGGAAGCGTGACCAAAGAATGTGATCACCATTTGTTTCAGCAACCGCAGATTGAAGCTTTTGACATTGTTTGGGCAAAGATTGAATGTACCATTAAGGATGTTTTAAGAGATCTAAATACTAGTGTATTTCATGATATTCAACAATGGGTTCTGGAGTGCTTCAATGCTACTAAGTTGCTTGGAGAACCTACTATTTCTGAAGCAACTCGGTCTTTTCCTGTTCTAAATAATACTCCTGGGAAGCTGTTCACTGCGCTAGTCAGTACCAGAAACATAGAGTACGTGGATGATATATTGACATTTGAAGAGCTTGGCAATTTCTTGAAATCCCATGGATCCCATGTGGCTATGCTTTCATCACTGGAATTTTCATTAAAAAATGGGATTGCTGGTTGCTTGAAAGCTTTATTGCGAGAGTTTCTGGGGGGTGCTATCGATTCAGCTGATATATCAATCTTAGCATCATGGTATAGAGAACAAGTCAACTACAATAAACCACTGGTGCTGATCATTAATGATTTGGAGAGATGTTGTGGATCAGTCTTAACTGATTTTATCTTGATGTTGAGTGAATGGGTTGTTAAGGTACCAATCATCTTCATATTTGGAGTTGCAACGACAGTGGATATTCCCCGGAACATTCTGTCATCACATGTTCTTGAGCGTTTGTGCCCCTCTAGGTTCATGCTTGGAACACCAGCTGAGAGAATGGATGCAATTGTTGAGGCCGTTCTTGTGAAACATTGCTCCACGTTTAGTATTAGTCATAAAGTGGCAGTCTTCCTGAGAAACTACTTCATCAACCAGGATGGGACAGTAACATCCATTATTAGAGCTTTGAAGGTAGCTTGCTTGCTACACTTCTCAATGGAACCTCTAAGTCTCGTACATGGGCGAATGCTTGCTGAAGATCAGAAAGAGGGAAAATCTGCACTATCACCTGAGACTATGTTGAAATACATAGATGAACTTCCTCTGTATGCAAGGAATCAAATGGTTGATCATCAGACTAAAAAGAACATGGCTGAGGGTTTGTCAGATTTGGTGGCAAAGCAGAAGCTATGGAGCACTGCAGTTCTGTGCCTATATGAAGCTGGAAAATATAGCAAAGTGCGACTATTGGATTTGTTTTGTGAAGCTCTCTGTCAAGATTTGTACCTGTCAAGGGTTTCTGATTGTCATGTGGGGGGTGAAAAAGATCGTGGTTTGTCCTCAACAAATGATCCCTGTCAACAATATTCCGTCATGCAAAGCGGTGGTTTTATTGGCCAGATAGTACGAAAAGTGAGGGATCTTCCTACAGGAGCGCTATATCAGTTGATTGAGAGTTGGGAAAAGATTACTGCAGATATTTCAGAGATTCATGAGAAATTGGAAACGTTGCAATCCTCAGTAATATGTGAAGATGGAAAGAGTCCACGCAAGAGTTCCAAGGACATTTACAAGAGATCTGCGTCCAAGATTTCAATAAACATTGACAAGGATGCCAGAATGTTAAATTCACAAGCTATCTCATTTCTAGATTGTATAGTTAGAAATTTTTTGAGGCCCATCGAAGGCATGCCTTTCCATGAAATTTTCTGCTTCAAGAATGTTGAAAAGCTTCAATTGGTTTTGATTGGAGATCCAAGAAGAAGAATTCAAGTTGATCTATTGGAGTTCCATAAGATTTTAAAGTGCAGTTGCTGTAGCAAGAGTGGCAATGCCCTATTGCCATCCAGGCACGATTCTTCAATTGTGTATTCTCTGGCTCAAGAGCATGGAGATCTTATCAATATTCATGACTGGTTCCAATCTTTTAGATCAATTGTTCTTCAACATAAAAATAAACGTAAACAAAAAGCAAAGCAGTCCCCCTCACCTAAGAAGAGAAAAGTTATGAATGGATCTGCAGACCAAAACGAATCATCAATTCAAGCACGCTTTTGTAGGGCAGTTACGGAGCTGCAGATCACTGGACTGGTTAGAATGCCCAGCAAGAGGCGCCGAGATTTTGCTCAAAGAGTAGCATTTGGACTTTGA 2220 0.4059 MAPFRSVSDSMPPSTTPEVIENDLQPFFVLHKASFRRKDRAPTAQAKLCKRSKLSSSSPESVKQLEGSVTKECDHHLFQQPQIEAFDIVWAKIECTIKDVLRDLNTSVFHDIQQWVLECFNATKLLGEPTISEATRSFPVLNNTPGKLFTALVSTRNIEYVDDILTFEELGNFLKSHGSHVAMLSSLEFSLKNGIAGCLKALLREFLGGAIDSADISILASWYREQVNYNKPLVLIINDLERCCGSVLTDFILMLSEWVVKVPIIFIFGVATTVDIPRNILSSHVLERLCPSRFMLGTPAERMDAIVEAVLVKHCSTFSISHKVAVFLRNYFINQDGTVTSIIRALKVACLLHFSMEPLSLVHGRMLAEDQKEGKSALSPETMLKYIDELPLYARNQMVDHQTKKNMAEGLSDLVAKQKLWSTAVLCLYEAGKYSKVRLLDLFCEALCQDLYLSRVSDCHVGGEKDRGLSSTNDPCQQYSVMQSGGFIGQIVRKVRDLPTGALYQLIESWEKITADISEIHEKLETLQSSVICEDGKSPRKSSKDIYKRSASKISINIDKDARMLNSQAISFLDCIVRNFLRPIEGMPFHEIFCFKNVEKLQLVLIGDPRRRIQVDLLEFHKILKCSCCSKSGNALLPSRHDSSIVYSLAQEHGDLINIHDWFQSFRSIVLQHKNKRKQKAKQSPSPKKRKVMNGSADQNESSIQARFCRAVTELQITGLVRMPSKRRRDFAQRVAFGL 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00160 739 MobiDBLite consensus disorder prediction 674 701 - -
Cca04g00160 739 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 21 738 - -
Cca04g00160 739 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 67 207 IPR045667 -
Cca04g00160 739 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 226 361 IPR045667 -
Cca04g00160 739 Pfam Origin recognition complex winged helix C-terminal 610 737 IPR040855 -
Cca04g00160 739 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 21 738 IPR020795 GO:0003677|GO:0005664|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00160 Cca-Chr4 1457530 1470320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00160 1 671 Core DNA Replication Machinery Family AT5G16690 45.228 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00160 K02605 - gmx:100780646 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00160 04 1457530 1470320 Cca04g00160 04 1457530 1470320 ECH