Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00139 ATGGCTCCATCTTCTGTCACTGTCACTTCCCGCTTCCATGAATCCGTCACCCGAAATGCACTTCGTTCCTACTTCGCTGAGTTTATCTCCACTTTCTTCTACGTCTTTCTTGTCGTTGGCTCCGGAATGTCCTCACGGAAGTTGATGCCGGATGCTTCACTGAACCCAACAAGTTTGGTTGTGGTTGCCATTGCAAGCGCTTTTGCTTTGTCTTGTGTTTTGTACATCGCATGGGACATCTCAGGTGGACACGTCAACCCGGCCGTGACCTTCGCAATGGCAGTGGGAGGCCACGTTAGTGTTCCAACCGCTCTCTTTTACTGGGCCGCTCAACTTATAGCCTCTGTCATGGCTTGCCTTGTTCTAAGGGTCATTGTTGTTGGAATGCATGTTCCAACGTACACGATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGTTGGAGGGACTTCTGACATTTGTTTTGGTGTACACTGTGTATGCAGCGAGGGACCCTAGGCGTGGTCCATTGACTTCCATTGGGACACTTGCGATTGGCTTAATGGCTGGGGCATGTGTCTTAGCCGCAGGTCCATTCTCTGGAGGATCAATGAACCCTGCCTGTGCTTTTGGTTCTGCTGCTATTGCGGGCAGTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATTGGTGCCACCGTGGCTGGCCTTCTTTATGACAATGTGCTGTTCCGTTCTTACCCTGCAGATTCAACTAGAGGGGAAGGAATTGGGGTGTAA 765 0.5059 MAPSSVTVTSRFHESVTRNALRSYFAEFISTFFYVFLVVGSGMSSRKLMPDASLNPTSLVVVAIASAFALSCVLYIAWDISGGHVNPAVTFAMAVGGHVSVPTALFYWAAQLIASVMACLVLRVIVVGMHVPTYTIAEEMTGFGASVLEGLLTFVLVYTVYAARDPRRGPLTSIGTLAIGLMAGACVLAAGPFSGGSMNPACAFGSAAIAGSFRNQAVYWVGPLIGATVAGLLYDNVLFRSYPADSTRGEGIGV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00139 254 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Cca04g00139 254 Pfam Major intrinsic protein 17 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00139 254 PANTHER AQUAPORIN TIP5-1-RELATED 7 247 - -
Cca04g00139 254 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00139 254 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00139 254 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00139 254 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00139 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00139 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00139 254 Gene3D Glycerol uptake facilitator protein. 5 246 IPR023271 -
Cca04g00139 254 SUPERFAMILY Aquaporin-like 12 244 IPR023271 -
Cca04g00139 254 PANTHER AQUAPORIN-8 7 247 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00139 Cca-Chr4 1299703 1301138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00139 1 253 Major Intrinsic Protein MIP AT3G47440 62.846 8.28e-108 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00139 K09873 - gmx:100801448 449.129