Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00137 ATGAACTTGGAATCCAAGGGCATACTCCTAGCAAATCTTCTAAAAGACTGTGCAGCGTATACTGAATCAGGCAACATCAATGGTGCAGATATTGCACTGTACCATCTCTCTCGCCTTGCTTCCCCTAATGGTGATCCACTGCAACGAGTTGCCACTTATTTCACCGAGGCACTAGCATATTGCCAAGTGGCCAAAAATTTGCGTGGTGTACCAAAAGTTCTGCGTTTGGTAAAAACAATATCAACTCTTGAACAAGAATTTGTGAGGCAACAATTCTTTAATTTGTATCCCTTCTTAAAGATTGCATACCTGATCACAAATCAAGCCATCATTGAAGCCATGCAAGGGGAAATAGCCATTAATGTCCTTGATCTCAGTCCATCTTCTGATGCTTTTCAATGGATTAGGCTCATGCAGGGTTTGAAAGAGCATTCACCAAACACCCCATGTATGAAAATTACTATCACAGCCATACATGAGAAGAAGGAGGTGTTAGAGCAAATGGAGTTGCTTCTTGGAGCTGAAGCTAAAAGGTTGGATTTTTATTTCCAATTCAATCCTGTTGTTAGCAATTTGGAGAGCCTTGACCCTGAGAAATTGCCTATCAAGAGAGGAGAGCCTCTTGCAATTAGTTGTGTGCTTCAGCTTCACTCTCTTTTGGCTACAGCTGATGATGACATGGTTAAGATGAGGGGTCAGATGATTTTTGCTGAGATGCTTTCCAAACagaataagaagaagaagatgaaTCCAAGTCCAAACTCAGCACTTTCACCTTTTTCTCCATGTCCATCTCATAAGATGGAGTGTTTTCTCAATGGCCTGTGGAAGCTCCAACCTAGAGTGTTGGTGATCACTGAGCAAGAATCAAATGTCAATGGGCCTAGTTTGACAGAGAGGGTGTACAAAGCTTTGGACTTTTATGGTACACTGTTTGATTGCTTGGAAGCTTCCACTTCTAGAACATTAGTAGAGAGAAGCCTAATGGAGAAGATGTTGCTTGGGGAGGAGATAAAGAACATTGTTGCATGTGAAGGGGTTGAGAGAAAGGAGAGGCATGAGAAACTTGTGACATGGATCCCAAGGCTTGAATTGGCAGGATTTGGGAGGGTACCTATAAGCCCTTATGGGATTTGGCTAGCATCAAAGTTGTTGCAAAGCTATGTACCAAGATACCACATACATCAGAAGCACAAATGCTTGTTTATTTGTTGGGACAAAATTCCTCTCTTCTCAGTTTCAGCCTGGAAGTTTTAG 1257 0.4145 MNLESKGILLANLLKDCAAYTESGNINGADIALYHLSRLASPNGDPLQRVATYFTEALAYCQVAKNLRGVPKVLRLVKTISTLEQEFVRQQFFNLYPFLKIAYLITNQAIIEAMQGEIAINVLDLSPSSDAFQWIRLMQGLKEHSPNTPCMKITITAIHEKKEVLEQMELLLGAEAKRLDFYFQFNPVVSNLESLDPEKLPIKRGEPLAISCVLQLHSLLATADDDMVKMRGQMIFAEMLSKQNKKKKMNPSPNSALSPFSPCPSHKMECFLNGLWKLQPRVLVITEQESNVNGPSLTERVYKALDFYGTLFDCLEASTSRTLVERSLMEKMLLGEEIKNIVACEGVERKERHEKLVTWIPRLELAGFGRVPISPYGIWLASKLLQSYVPRYHIHQKHKCLFICWDKIPLFSVSAWKF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00137 418 PANTHER SCARECROW-LIKE PROTEIN 3 6 417 - -
Cca04g00137 418 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 417 IPR005202 -
Cca04g00137 418 Pfam GRAS domain family 11 417 IPR005202 -
Cca04g00137 418 ProSiteProfiles GRAS family profile. 1 417 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00137 Cca-Chr4 1291611 1292867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00137 4 417 GRAS Transcription Factor Family AT1G50420 44.165 5.75e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00137 GRAS 1.2e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00137 - - vra:106778126 603.594