Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00133 ATGTCCCCAACAAATGTGAAGAAGAACAAGAAGTGTGACATTTTCAGTGGTGAATGGGTGCCAAATCCAGAGGCACCATATTACACAAACACAACATGTTGGGAAATTCATGAGCACCAAAATTGCATGAAATATGGGAGACCTGACTCTGAGTTCATGAAGTGGAGGTGGAAGCCTAATGAATGTGAACTTCCTATTTTCAACCCTTTTCAGTTTCTAGAAATCATGAGGGGAAAATCAATGGCTTTTGTTGGAGACTCCATAGGCAGAAATCACATGCAGTCAATGATTTGCCTACTGTCAAGGGTTAGAGGCGATATAGCAAGGGCATTAATGTACATGGCAGTCTGTTATGGGTTCCAACAACCAGGGGGAAGTCCAGGCCTTCGCCTCTCGGATGCCCCAAACGTTGAAAACAGGGAGATGGGACTTCTTTCCACTTTATTAAAATGGAATGAAGTTGATCCGCCTTCGAGGGAAGAAAAACTGAGAAATGAAAGGATATGCAAATTTTATCAGCATAATCGTAATCCTTTTGTCGATCATCCGGAATATGTTAATCTTATATGGAAGCAAGCTGTATCAAGACATGCTCCTCATAGCAAAAGCAACAACAGTAATTCCCCGCACAAGGAAAAGGTGTTAGGAATGTCTTgggtatacccaatacccgacggggacgaggatggggatgaaaagcacatacccgatgggtacagATCAATCTACACGCACATCACTGTTGTAATGGCGGACAGTGTGGTTTCCTTTGTATTAGATCACTTGTCTCAACTGATGGCACGTGAAGCAAAGTTGCTGTGTGGCGTGGAAGACAGGATCAAGTCCCTCCAAAATGAGCTTGAAATGATCAATGAGTTCCTCAATACCTCAAAGAGCAAAAAGGGGATTGAGAAAAAAGTGGTGAGCCAAATCAGAGATGTTGCCCATCTAGCTGAGGATGTCATCGACACATACGTTGCCAAAGTTGCCATACACGAGAGGAGAACCATGATGGGTAGGCTCCTCCATAGCGTTCACCAAGCAAGGTTGCTCCATGACGTAGCTGAGAAAATAGACCAGATAAAAAACACTATCAGTGAGATACGCAACAACAAGATCAAATATGAAGAATTCCAAGAAAGCAACAGTCAATCCACAACGAAAGCAgaggaggaggagaaggagaaggaAAGGGCGCAATTACTACACAAGCTAAGAAGAAATGTGGAGGAAGAAGATGTAGTAGGCTTTGTACGTGACTCCAACGTAGTCATCAGGCGACTCCTAGAAGGTGGTTCATCTCGTAACGTTGTCTccatcattggcatgggtggattgggcaagaccacccttgcccgaaaggtctATAACAGCAGAGAGGTGAAACAATACTTTAGATGTTGCGCGTGGGTTTATGTGTCGGACGAGTGTAGAGTCAAGGAGATTTTCCTTGGCCTTCTTAAGCATTTGATGCCAAACCTTGAATACCAACGTAGAGGCAACACGAAAGGTAAGAAACGCACAAGAGAATTTAACATTTCTAAGTTGAGCGAGGAGGAGTTGAAAAAACTGGTGAGAGAATGCTTGGAGAGGAAAAGGTATCTGGTGGTCCTCGATGACCTGTGGAAAACACAAGATTGGGACGAGTTGCACGATGCTTTTCCTGACGACAACAAAGGCAGCAGGATATTGATTACTAGTCGTTTGAAAGAGGTGGCGTTGCATACTAGCCATCATCCTCCTTACTATCTTCAGTTTCTTAGTGAAGATGAAAGTTGGGAGCTCTTCTGCAAGAAAGTGTTTAGGGGCGAAGAGTACTCTTCTGATTTGGAGCCTTTGGGGAAACAGATAGTTCAAAGTTGTCGTGGTTTGCCACTCTCAATCGTGGTGTTAGCAGGGTTGCTAGCCAACAAGGAAAAATCATATAGAGAATGGTCTAAAGTGGTGGGTCATGTCAACTGGTATCTTACTCAAGATGAGACCCAAGTGAAGGATATAGTTCTCAAACTCAGCTATGACAACCTGCCAAGGAGATTGAAACCGTGCTTTCTGTTTCTTGGGATATTCCCCGAAGACTTTGAAATCCCAGTTAGGCCATTATTGCAACGATGGGTTGCCGAAGGATTTATACAAGAAACAGGGAATAGAGACCCAGATGATGTTGCTGAAGACTACTTGTACGAGCTCATTGATCGTAGTTTGGTCCAAGTAGCAGCAATGAAGACAAGTGGAGGCGTGAAGACTTGTCACATCCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAAGACAAGGTTTTCCAAGTTTGCACAGGTAATAACATTCTAATCTCCACAAAACCCCGCAGACTGTCCATTCATTGTAATATGGGTGACTACATTTCTTCAAACAACAATGACCAGTCATGTATCCGTTCTTTGTTCATGTTTGGGCCACGTTATTTTTTTATTCCAAGCGAGTTGAAAAGACTTTTCAAAGGCTTCAAATTGGTTCGAGTGTTAGAGCTTGGAACAGACAGTTGTGGAGGAAAGATTCCATCTAATTTGGGGGACTTTATCCACTTAAGGTATTTGAGAATTGACTCGCAACATGTTAGAATTATTCCAGCTTCTATACTTACCCTTCAGAatttacaaaccgtagacctaggttgctggcgtttgactattccaatttctttccctgcTCAAATATGGAAGCTCAAACATTTAAGGCATTTGTATGCTCCAGGGCCTATCAAGCTTAGAGGCCACTATTCAAAACCAAGTGAGGTTATGTGGAATCTTCAAACCATGAACGCCATTGTGTTGGACGAACAAGCATCATATTTGATATATAAAGGAACTTTCCCCAACCTTAAGAATTTAGGTCTGAAAATATCTTCGGGTCGCAAGGCTAAATGGCCTAAGTTGTTGCAGAGCCTACTACAATTAAGTCATTTGAGTAAGTTAAGGATTTCCTTTGAAATGAAGTTGTTTGAAGGTTCAGTGTCCCGAAACTATGTGAACAGCATGGAGTGGCACATTGGTTGTAAGCCACAAGAAGTATTACAAAGCATAGGGCAGTTGAGTCATGTAACTACGCTGAATATTCGCAATGCCTTGGACCTTCTAACATGTAGGGTCACGTTTCCTCCAAATGTTATAAAGTTAACATTGACAGGTATTAGTTGTGTGACTGATGAGGGAATGGATTCTTTGGGAAATCACACCAAACTCCAAAAATTGAGACTAACCGGAGGATTTTGGTCAGATTCCTTTGACCTCAATTGTGTTGCAGGAAGGTTCCCACAACTGCAGGTGTTTGAGATGAGTGGTTTGAAAGTTAGAAACTGGAAATTAGGCAACAGTGCAATGTTATGCCTCCAAAGTCTGATCATCCACAAATGTGAAATGTTAGATGGCATTCCAAATGAACTGTGGTCTTTGATTGCCTTGAGAAAAGTGCAAGTAAAGCAACCCTCGGAAGCAATGGCTCACATGCTACAAAACTTGGAAATGAAGGATGGGGTTGAACTTATAGTTGAACCGAAGGAACGTCATGATTCTACTGTAATATTATCTATGGATGAAATTTGGGAGGCATTTAATTCACGTGGTATTGTTTTTGTTTATTAG 3624 0.3951 MSPTNVKKNKKCDIFSGEWVPNPEAPYYTNTTCWEIHEHQNCMKYGRPDSEFMKWRWKPNECELPIFNPFQFLEIMRGKSMAFVGDSIGRNHMQSMICLLSRVRGDIARALMYMAVCYGFQQPGGSPGLRLSDAPNVENREMGLLSTLLKWNEVDPPSREEKLRNERICKFYQHNRNPFVDHPEYVNLIWKQAVSRHAPHSKSNNSNSPHKEKVLGMSWVYPIPDGDEDGDEKHIPDGYRSIYTHITVVMADSVVSFVLDHLSQLMAREAKLLCGVEDRIKSLQNELEMINEFLNTSKSKKGIEKKVVSQIRDVAHLAEDVIDTYVAKVAIHERRTMMGRLLHSVHQARLLHDVAEKIDQIKNTISEIRNNKIKYEEFQESNSQSTTKAEEEEKEKERAQLLHKLRRNVEEEDVVGFVRDSNVVIRRLLEGGSSRNVVSIIGMGGLGKTTLARKVYNSREVKQYFRCCAWVYVSDECRVKEIFLGLLKHLMPNLEYQRRGNTKGKKRTREFNISKLSEEELKKLVRECLERKRYLVVLDDLWKTQDWDELHDAFPDDNKGSRILITSRLKEVALHTSHHPPYYLQFLSEDESWELFCKKVFRGEEYSSDLEPLGKQIVQSCRGLPLSIVVLAGLLANKEKSYREWSKVVGHVNWYLTQDETQVKDIVLKLSYDNLPRRLKPCFLFLGIFPEDFEIPVRPLLQRWVAEGFIQETGNRDPDDVAEDYLYELIDRSLVQVAAMKTSGGVKTCHIHDLLRDLCISESKEDKVFQVCTGNNILISTKPRRLSIHCNMGDYISSNNNDQSCIRSLFMFGPRYFFIPSELKRLFKGFKLVRVLELGTDSCGGKIPSNLGDFIHLRYLRIDSQHVRIIPASILTLQNLQTVDLGCWRLTIPISFPAQIWKLKHLRHLYAPGPIKLRGHYSKPSEVMWNLQTMNAIVLDEQASYLIYKGTFPNLKNLGLKISSGRKAKWPKLLQSLLQLSHLSKLRISFEMKLFEGSVSRNYVNSMEWHIGCKPQEVLQSIGQLSHVTTLNIRNALDLLTCRVTFPPNVIKLTLTGISCVTDEGMDSLGNHTKLQKLRLTGGFWSDSFDLNCVAGRFPQLQVFEMSGLKVRNWKLGNSAMLCLQSLIIHKCEMLDGIPNELWSLIALRKVQVKQPSEAMAHMLQNLEMKDGVELIVEPKERHDSTVILSMDEIWEAFNSRGIVFVY 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00133 1207 CDD RX-CC_like 251 370 IPR038005 -
Cca04g00133 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 686 IPR027417 -
Cca04g00133 1207 Gene3D - 672 762 IPR036388 -
Cca04g00133 1207 Coils Coil 351 371 - -
Cca04g00133 1207 Pfam NB-ARC domain 422 674 IPR002182 GO:0043531
Cca04g00133 1207 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 64 103 IPR026057 GO:0016740
Cca04g00133 1207 PANTHER DISEASE RESISTANCE PROTEIN RP 286 1176 IPR044974 GO:0006952
Cca04g00133 1207 Pfam Rx N-terminal domain 254 333 IPR041118 -
Cca04g00133 1207 Pfam PMR5 N terminal Domain 10 63 IPR025846 -
Cca04g00133 1207 Gene3D Ribonuclease Inhibitor 808 997 IPR032675 -
Cca04g00133 1207 PANTHER - 286 1176 - -
Cca04g00133 1207 Gene3D - 254 355 - -
Cca04g00133 1207 SUPERFAMILY L domain-like 751 1152 - -
Cca04g00133 1207 Pfam Endonuclease I 101 184 IPR007346 GO:0004518
Cca04g00133 1207 PRINTS Disease resistance protein signature 528 542 - -
Cca04g00133 1207 PRINTS Disease resistance protein signature 621 635 - -
Cca04g00133 1207 PRINTS Disease resistance protein signature 437 452 - -
Cca04g00133 1207 SUPERFAMILY His-Me finger endonucleases 101 184 IPR044925 -
Cca04g00133 1207 Gene3D Ribonuclease Inhibitor 1012 1171 IPR032675 -
Cca04g00133 1207 Gene3D - 586 671 IPR042197 -
Cca04g00133 1207 Coils Coil 375 402 - -
Cca04g00133 1207 Gene3D - 398 579 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00133 Cca-Chr4 1240756 1250100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00133 438 758 WRKY Transcription Factor Family AT5G45050 23.988 6.61e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00133 - - gmx:100814688 1332.78