Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00132 ATGGCGGACAGTGTGGTTTCCTTTGTATTAGATCACTTGTCTCAACTGATGGCACGTGAAGCAAAGTTGCTGTGTGGCGTGGAAGACAGGATCAAGTCCCTCCAAAATGAGCTTGAAATGATCAATGAGTTCCTCAATACCTCAAAGAGCAAAAAGGGGATTGAGAAAAAAGTGGTGAGCCAAATCAGAGATGTTGCCCATCTAGCTGAGGATGTCATCGACACATACGTTGCCAAAGTTGCCATACACGAGAGGAGAACCATGATGGGTAGGCTCCTCCATAGCGTTCACCAAGCACGGTTGCTCCATGACGTAGCTGAGAAAATAGACCAGATAAAAAACACTGTCAGTGAGATACGCAACAACAAGATCAAATATGAAGAATTCCAAGAAAGCAACAATCAATCCACAACAAAAGCAGAGGAGGAGGAGAAGGAAAGGGCGCAATTACTACACAAGATAAGAAGAAATGTGGAGGAAGAAGATGTAGTAGGCTTTGTACGTGACTCCAACGTAGTCATCAGGCGACTCCTAGAAGGTGGTTCATCTCGTAACGTTGTCTccatcattggcatgggtggattgggcaagaccacccttgcccgaaaggtctATAACAGCAGAGAGGTGAAACAATACTTTAGATGTTGCGCGTGGGTTTATGTGTCAAACGAGTGTAGAGTCAAGGAGATTTTTCTTGGCCTTCTTAAGCATTTGATGCCAAGCCTTGAATACCAATGTAGAGGCAACAAGAAAGGTAAGAAACACACAAGAGAATTAAACATTTCTAAATTAAACGAGGAGGAGTTGAAAAAACTGGTGAGAGAATGCTTGGAGAGGAAAAGGTATCTGGTGGTCCTCGATGACCTGTGGAAAACACAAGATTGGGACGAGTTGCACGATGCTTTTCCTGACGACAACAAAGGCAGCAGGATATTGATTACTAGTCGTTTGAAAGAGGTGGCGTTGCATACTAGCCATCATCCTCCTTACTATCTTCAGTTTCTTAGTGAAGATGAAAGTTGGGAGCTCTTCTGCAAGAAAGTGTTTAGGGGCGAAGAGTACTCTTCTGATTTGGAGCCTTTGGGGAAACAGATAGTTCAAAGTTGTCGTGGTTTGCCACTCTCAATCGTGGTGTTAGCAGGGTTGCTAGCCAACAAGGAAAAATCATATAGAGAATGGTCTAAAGTGGTGGGTCATGTCAACTGGTATCTTACTCAAGATGAGACCCAAGTGAAGGATATAGTTCTCAAACTCAGCTATGACAACCTGCCAAGGAGATTGAAACCATGCTTTCTGTTTCTTGGGATATTCCCCGAAGACTTTGAAATCCCAGTTAGGCCATTATTGCAACGATGGGTTGCCGAAGGATTTATACAAGAAACAGGGAATAGAGACCCAGATGATGTTGCTGAAGACTACTTGTACGAGCTCATTGATCGTAGTTTGGTCCAAGTAGCAGCTATGAAGACTAGTGGAGGTGTGAAGACTTGTCACATCCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAGGACAAGGTTTTCCAAGTTTGCACAGGTAATAACATTCTAATCTCCACAAAACCCCGCAGACTGTCCATTCATTGTAACATGGGTGATTACATTTCTTCAAATAACAATGACCAGTCATGTATTCGTTCTTTGTTCATGTTTGGACCCCATTATTTTTTTATCCCAAGCGAGTTGAAAAGACTTTTCAAAGGCTTCAAATTGGTTCGAGTGTTAGAGCTTGGAACAGACAGTTGTGGAGGAAAGATTCCATCTAATTTGGGGGACTTTATCCACTTAAGGTATTTGAGAATTGACTCGCAACATGTTAGAATTATTCCAGCTTCTATACTTACCCTTCAGAatttacaaaccgtagacctaggttgttggcgtttgactattccaatttctttccctgcTCAAATATGGAAGCTCAAACATTTAAGGCATTTGTATGCGCCAGGGCCTATCAAGCTTAGAGGCCACAATTCAAAACCAAGTGAGGTTATGTGGAATCTTCAAACCATGAACGCCATTGTGTTGGACGAACAAACATCATATTTGATAAATAAAGGAACTTTCCCCAACCTTAAGAATTTAAGTCTGCAAATATCTTCGGGTCGCAAGGCTAAATGGCCTAAGTTGTTGCAGAGCCTACAACAATTAAGTCATTTGAGTAAGTTAAGGATTTCCTTTGAAATCAATTTTTGTGAAGGTTCACTGTCCGGAAACTATATGAAAAGCATGGAGTGGCACATTGGTTGTAAGCCGCAAGAAGTATTACAATGCATAGGGCAGTTGAGTCATGTAACTACGCTGAAAATTGTCAATGCCTTGGACCTTCTAACATGTAGGGTCACGTTTCCTCCAAATGTTATAAAGTTAACATTGACAGGTATTAGTTGTGTGACTGATGAGGGAATGGATTCTTTGGGAAATCACACGAAACTCCAAAAATTGAGACTAACTGGAGGAATTTTGTCAGAAGAGTTGCCTCCGAGGGGATTTTGA 2532 0.3989 MADSVVSFVLDHLSQLMAREAKLLCGVEDRIKSLQNELEMINEFLNTSKSKKGIEKKVVSQIRDVAHLAEDVIDTYVAKVAIHERRTMMGRLLHSVHQARLLHDVAEKIDQIKNTVSEIRNNKIKYEEFQESNNQSTTKAEEEEKERAQLLHKIRRNVEEEDVVGFVRDSNVVIRRLLEGGSSRNVVSIIGMGGLGKTTLARKVYNSREVKQYFRCCAWVYVSNECRVKEIFLGLLKHLMPSLEYQCRGNKKGKKHTRELNISKLNEEELKKLVRECLERKRYLVVLDDLWKTQDWDELHDAFPDDNKGSRILITSRLKEVALHTSHHPPYYLQFLSEDESWELFCKKVFRGEEYSSDLEPLGKQIVQSCRGLPLSIVVLAGLLANKEKSYREWSKVVGHVNWYLTQDETQVKDIVLKLSYDNLPRRLKPCFLFLGIFPEDFEIPVRPLLQRWVAEGFIQETGNRDPDDVAEDYLYELIDRSLVQVAAMKTSGGVKTCHIHDLLRDLCISESKEDKVFQVCTGNNILISTKPRRLSIHCNMGDYISSNNNDQSCIRSLFMFGPHYFFIPSELKRLFKGFKLVRVLELGTDSCGGKIPSNLGDFIHLRYLRIDSQHVRIIPASILTLQNLQTVDLGCWRLTIPISFPAQIWKLKHLRHLYAPGPIKLRGHNSKPSEVMWNLQTMNAIVLDEQTSYLINKGTFPNLKNLSLQISSGRKAKWPKLLQSLQQLSHLSKLRISFEINFCEGSLSGNYMKSMEWHIGCKPQEVLQCIGQLSHVTTLKIVNALDLLTCRVTFPPNVIKLTLTGISCVTDEGMDSLGNHTKLQKLRLTGGILSEELPPRGF 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00132 843 Gene3D Ribonuclease Inhibitor 522 842 IPR032675 -
Cca04g00132 843 Gene3D - 5 98 - -
Cca04g00132 843 Coils Coil 102 122 - -
Cca04g00132 843 Pfam Rx N-terminal domain 5 84 IPR041118 -
Cca04g00132 843 PRINTS Disease resistance protein signature 277 291 - -
Cca04g00132 843 PRINTS Disease resistance protein signature 370 384 - -
Cca04g00132 843 PRINTS Disease resistance protein signature 186 201 - -
Cca04g00132 843 PRINTS Disease resistance protein signature 778 794 - -
Cca04g00132 843 SUPERFAMILY L domain-like 500 835 - -
Cca04g00132 843 CDD RX-CC_like 2 121 IPR038005 -
Cca04g00132 843 Pfam NB-ARC domain 171 423 IPR002182 GO:0043531
Cca04g00132 843 Coils Coil 126 160 - -
Cca04g00132 843 PANTHER DISEASE RESISTANCE PROTEIN RP 37 801 IPR044974 GO:0006952
Cca04g00132 843 Gene3D - 421 512 IPR036388 -
Cca04g00132 843 Gene3D - 154 328 IPR027417 -
Cca04g00132 843 Gene3D - 335 420 IPR042197 -
Cca04g00132 843 PANTHER - 37 801 - -
Cca04g00132 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 435 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00132 Cca-Chr4 1227814 1230345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00132 187 507 WRKY Transcription Factor Family AT5G45050 23.988 2.64e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00132 - - gmx:100814688 1230.7