Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00128 ATGGCCAAGAAGAAGAGCTGGTTTAGTCTGGTGAAGAGGCTCTTTATATGGGACACACATTCCACTCAAGACAAGAAAGAGAAGAGAAGGAAATGGGTCTTTGGAAGGCTTAAGAGCAAAAGATTACCATCAATTACAGCACCACCGCCATCAAAAGAAACAACATTAACACTAAGTGAAGCAGAGGAAGaacagaacaatcatgctttaacagtggccattgcctcagcagctgctgctgaagctgctgttactgctgctcatgctgcagctgaggttgttCGTCTCACTGGGGTCTCACAATCTGCCCTTCAACGCAAAGAAAACTCAGAAGAATCTCAACCTCTGAAAACTAGGAATGGTGCTCCTCAATCCACATACCAGTGCCTCAGGGAGATTAAAGAATCTGCTGCAGCCATCATGATTCAAACTGCATTTAGGGGTTACCTGGCAAGGAAGGCTTTGAGGGCATTGAAGGGAATTGTGAAGCTTCAAGCTATCATTCGAGGCAGAGCAGTAAGACGCCAAGCTATGAGTACTCTTAAGTGCTTACAGTCCATAGTGAGTATCCATTCACAGGTATGTGCAAGGAGACTCCAAATGGTTGAAGGGAGATGTGATTACACTGAAAATGAAGAGATGCAAGATTCTAGAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGGAAGGATGAAAGCACTTTATTGAAGGAAGAGGTAGACAGCTCTTGCATAAGCAAGAAAGAAACAGATCTCAAGAAAGAAAGACTAAAAGCATACTCATTTAACCATAGAAGGTCAGCAGAGACAGAAAGAAGTAAAGTAAATGGAAGATGGAGATACTGGCTAGAGCAGTGGGTAGATACACAACTTTCAAAGAGCAAAGAACTTGAAGATTTAGACTCAATTTTTAGCACACATTCTAGAGCTGAGGAGGAATATGGAGGAAGGCAACTTAAGCTGAGAAGTATTCAAAGACAGAATCCAGTTGAAGGATTAGATTCTCCAATACTTTCTTCAAGAAGATCTTTTCCTCATAGGAGGCAGTGTTCAGTGGGAGAAGACCACTCATTTTCAAGCTCTCCTGCAACTCCAGCATACATGGCTGCAACTGAATCAGCAAAAGCAAAAGCAAGATCAACAAGCTCCCCAAAAGTAAGGACAGGGGGGAATGTGGACATGAACTCTGATAGCTATTCACCATGCAAGAAAAAGCTATCCATTGCATCTTCTATTAACAGTGAAGTGCTTAGTGGTGGTAGGATGTGCAAGATCAGTGGTAACCAGCAAAGATCTCCAAGTTTTAAGGGTCTTTCAGTGCCTATAAAATCAAACCGAACTATCAAGGATCTCAGTATTAATTCGGATTGCTCACTGCCTAATTGGGATCGACAAGGTTCCTTCAAATGA 1413 0.3914 MAKKKSWFSLVKRLFIWDTHSTQDKKEKRRKWVFGRLKSKRLPSITAPPPSKETTLTLSEAEEEQNNHALTVAIASAAAAEAAVTAAHAAAEVVRLTGVSQSALQRKENSEESQPLKTRNGAPQSTYQCLREIKESAAAIMIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIHSQVCARRLQMVEGRCDYTENEEMQDSRDKIIRMDSNSERKDESTLLKEEVDSSCISKKETDLKKERLKAYSFNHRRSAETERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSIFSTHSRAEEEYGGRQLKLRSIQRQNPVEGLDSPILSSRRSFPHRRQCSVGEDHSFSSSPATPAYMAATESAKAKARSTSSPKVRTGGNVDMNSDSYSPCKKKLSIASSINSEVLSGGRMCKISGNQQRSPSFKGLSVPIKSNRTIKDLSINSDCSLPNWDRQGSFK 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00128 470 ProSiteProfiles IQ motif profile. 135 163 IPR000048 GO:0005515
Cca04g00128 470 Pfam Protein of unknown function (DUF4005) 355 433 IPR025064 -
Cca04g00128 470 Pfam IQ calmodulin-binding motif 137 156 IPR000048 GO:0005515
Cca04g00128 470 PANTHER IQ-DOMAIN 11 5 456 - -
Cca04g00128 470 SMART iq_5 134 156 IPR000048 GO:0005515
Cca04g00128 470 MobiDBLite consensus disorder prediction 104 123 - -
Cca04g00128 470 MobiDBLite consensus disorder prediction 376 399 - -
Cca04g00128 470 PANTHER IQ-DOMAIN 5-RELATED 5 456 - -
Cca04g00128 470 ProSiteProfiles IQ motif profile. 159 186 IPR000048 GO:0005515
Cca04g00128 470 MobiDBLite consensus disorder prediction 370 399 - -
Cca04g00128 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 177 IPR027417 -
Cca04g00128 470 Gene3D - 127 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00128 Cca-Chr4 1211749 1214280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00128 1 470 IQD Protein Family AT5G13460 45.291 8.67e-110 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00128 - - gmx:100800192 766.148