Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00126 ATGGAGAAGTACCTGAGAGAAAACTTTAGCGTGCAGCCGAAGAATCCCTCGGAGGCGGCACTTCTCCGATGGAGATCCGCCGTCTCAGTCGTCAAAAATCCCCGCCGCCGCTTCCGCATGGTCGCCAATCTCGCCCAACGCGCCGACTCCGAACAAAAGCGCAAGAGGCTTCAGGAGAAGATACGGGTGGCTCTCTATGTGCAAAAAGCAGCGTTGCATTTTATTAACGCTGGGAGCCAAGGTGCTGATTACATGCTCGCCAAACAGATACAGGAAGCAGGCTTCCGAATTGATCCCGAAGGATTAGCCAATATTGTTCGATCCCATGACCTCAAATGTTTAGAACACTATGAAGGAGTTGAAGGAGTTGCAAGAGATGTTCGTGTGTCATTGCATGAGGGTGTTAGTTCACTAGACGTTGAGCATAGACAAAAAATCTTTGGTTTTAACCGCCATGCCGAGAAGCCCTCTAGAAGCTTTTGGATGTTCGTTTGGGATGCAATGCAGGACTTAACTCTAATTATCCTTATGGTATGTGCTTTTGTTTCAGTAGGTGTTGGAATCTTAACTGAAGGTTGGCCAAAAGGTATGTACGATGGAGTGGGAATCATACTATGTATCATGTTAGTGGTCTTTGTCACATCAATCAGTGACTATAGACAGTCCTTGCAATTTAAGGATTTGGATAAAGAAAAGAAAAATATCGGCATTCAAGTTACAAGAGACAGTAGAAGACAAAAGGTTTCGATTCATGATATAGTGGTAGGAGACATAGTACATCTATCAATTGGAGACATAGTTCCTGCAGATGGGTTATTCATATCAGGTTTCGGCTTATTAATAGATGAATCGAGTCTATCAGGTGAGAGTGAAGCTGTGAATGTTAATCAACAGAAGCCTTTTCTTCTATCCGGAACTACGGTGCAAGATGGGTCTGCTAAGATGCTGGTGATCTCCGTTGGTATGAGGACTGAATGGGGAAGATTAATGTATACTCTTTCCGAAGGGGGAGATGATGAGACGCCTCTTCAGGTCAAACTAAATGGAGTTGCCACCATTATTGGAAAGATAGGCTTGGGTTTTGCCCTGCTGACATTCGTGGTTCTGACGGGCAGGTTTTTGCTGGGGAAAATAGCTCACCATGAAATAACAAAATGGTCCTTAGATGATGCATCTAAACTTCTCAATTTCTTTGCTACTGCTGTCATTATAATAGTTGTGGCAGTTCCCGAGGGGCTTCCTTTGGCAGTGACACTAAGCCTTGCATTTGCAATGAAGAAATTGATGGAGGACAAGGCACTAGTCAGGCACCTCTCCGCATGTGAGACAATGGGTTCAGCTGGTTGTATTTGCACCGATAAAACGGGCACTTTAACAACGAATCACATGGTTGTAGACAAAATATGGATTAGCGGACAAACTAAGGCCATTAAAAGCGGCAACAAGGAAAATGTGTTGAAGTCCTCAATTTCTGAACAGATATTTGATCTCCTTTTGCAATCCATATTCCAGAATACTGGGTCGGAGATAGTCAAAGGTCAAGATGGAAAGACCAAGATCATGGGTACTCCCACAGAATCCGCGTTGCTGGAATTTGGCTTGCTTTTGGGAGGTGATTCCAAGTTATATAACGAGAAGTATAAAATAGTAAAGGTTGAACCTTTCAATTCAGTCAGAAAAAAGATGTCGGTGCTGGTGGCTATTCCCGATGGAACCAACAAGTTCCGAGCATTTTGTAAAGGGGCATCAGAAATAGTTTTGGAACTGTGTGACAAAGTTGTTAATGAAGACGGCAAGGTCATCCTCTTGAACGAACAACAAAGGAATGGCATCACAGAAGTTATCAATGGTTTTGCTTCTGAAGCTCTTAGAACACTCTGCATTGCCTTCAAGGATATTGAAGAATTTTCTGAAAGTGATAGTATTCCTGAGGATAAGTACACGTTAATAGGTATTGTTGGGATCAAGGATCCAGTGAGGCCTGGAGTAAAAGAAGCTGTTAAGACTTGTTTAGAAGCTGGCATCATCGTTAGAATGGTAACTGGTGACAACATAAATACTGCTAAAGCAATAGCTAGAGAATGCGGCATACTGACAGATGGAATCGCGATAGAGGGACCAGATTTCCGGAACAAGAGCCCGCAAGAAATGGAGGATATAATACCAAAAATACAGGTAATGGCCCGATCCTTGCCTCTTGACAAACACACCTTAGTGACCCATTTGAGGAATGTCTTTAATGAGGTTGTGGCAGTTACTGGTGACGGGACCAACGACGCTCCAGCGTTGCATGAGGCTGATATTGGACTTGCTATGGGTATTGCAGGGACAGAGGTTGCTAAAGAGAACGCGGATGTGATTGTATTGGATGATAACTTCACGACCATAGTCAATGTTACTAGATGGGGCCGTGCTGTTTATATTAATATACAAAAGTTTGTCCAGTTCCAGTTAACAGTTAATGTTGTAGCTCTCATGCTGAATTTCGTTTCCGCATGCGTGTCAGGTTCTGCTCCTCTTACCGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACTCTCGGCGCATTGGCACTGGCTACAGAACCTCCTCATGATGGGCTGATGAAGAGACCACCTATTGGAAGGAACGCCAAATTCATCACCAGGATCATGTGGAGGAACATAATTGGTCAGAGCATCTATCAAATTATTGTCCTTTTAGTTCTTAAATTTCGTGGTGAACAGATTCTCAAGCTCAATGGACCTGATGCCACCATAGTTCTGAATACCGTCATATTCAACACCTTTGTATTTTGCCAGGTATTCAACGAGATAAATAGCCGTGACATGGAGAAGATCAATGTTTTCCAAGGCATGTTCAGCAGCTGGGTTTTTATGATGGTCATGGCCGCAACGATATGCTTTCAAACCATAATAGTTGAATTTCTGGGTACTTTTGCTCAAACAGTACCACTGAGCTGGAAGTTGTGGTTAGTATGCATCTTGATTGGTGCGGTAAGTTTAGTTGTAGCTGTTGTCTTAAAGTGCATTCCTGTTCCATCGAGTAGCTACGACTACGTGGTTACGCATCCCGATGGTTACGAGGAGCTCCCCAGTGGACCAGAGCAGGCATGA 3120 0.4362 MEKYLRENFSVQPKNPSEAALLRWRSAVSVVKNPRRRFRMVANLAQRADSEQKRKRLQEKIRVALYVQKAALHFINAGSQGADYMLAKQIQEAGFRIDPEGLANIVRSHDLKCLEHYEGVEGVARDVRVSLHEGVSSLDVEHRQKIFGFNRHAEKPSRSFWMFVWDAMQDLTLIILMVCAFVSVGVGILTEGWPKGMYDGVGIILCIMLVVFVTSISDYRQSLQFKDLDKEKKNIGIQVTRDSRRQKVSIHDIVVGDIVHLSIGDIVPADGLFISGFGLLIDESSLSGESEAVNVNQQKPFLLSGTTVQDGSAKMLVISVGMRTEWGRLMYTLSEGGDDETPLQVKLNGVATIIGKIGLGFALLTFVVLTGRFLLGKIAHHEITKWSLDDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMEDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKIWISGQTKAIKSGNKENVLKSSISEQIFDLLLQSIFQNTGSEIVKGQDGKTKIMGTPTESALLEFGLLLGGDSKLYNEKYKIVKVEPFNSVRKKMSVLVAIPDGTNKFRAFCKGASEIVLELCDKVVNEDGKVILLNEQQRNGITEVINGFASEALRTLCIAFKDIEEFSESDSIPEDKYTLIGIVGIKDPVRPGVKEAVKTCLEAGIIVRMVTGDNINTAKAIARECGILTDGIAIEGPDFRNKSPQEMEDIIPKIQVMARSLPLDKHTLVTHLRNVFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVLDDNFTTIVNVTRWGRAVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGRNAKFITRIMWRNIIGQSIYQIIVLLVLKFRGEQILKLNGPDATIVLNTVIFNTFVFCQVFNEINSRDMEKINVFQGMFSSWVFMMVMAATICFQTIIVEFLGTFAQTVPLSWKLWLVCILIGAVSLVVAVVLKCIPVPSSSYDYVVTHPDGYEELPSGPEQA 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00126 1039 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Cca04g00126 1039 SMART Cation_ATPase_N_a_2 114 188 IPR004014 -
Cca04g00126 1039 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Cca04g00126 1039 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Cca04g00126 1039 PANTHER CATION TRANSPORTING ATPASE 3 1022 - -
Cca04g00126 1039 Pfam Cation transport ATPase (P-type) 513 593 - -
Cca04g00126 1039 Pfam E1-E2 ATPase 238 429 - -
Cca04g00126 1039 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 108 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca04g00126 1039 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 663 IPR023299 GO:0000166
Cca04g00126 1039 Gene3D - 461 658 IPR023299 GO:0000166
Cca04g00126 1039 SFLD C1.7: P-type atpase like 433 805 - -
Cca04g00126 1039 Gene3D - 134 334 - -
Cca04g00126 1039 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 547 699 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g00126 1039 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 203 516 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g00126 1039 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 720 841 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g00126 1039 CDD P-type_ATPase_Ca_PMCA-like 140 886 - -
Cca04g00126 1039 Gene3D - 166 1012 - -
Cca04g00126 1039 Gene3D - 448 798 IPR023214 -
Cca04g00126 1039 SUPERFAMILY Calcium ATPase, transduction domain A 237 330 IPR008250 -
Cca04g00126 1039 Gene3D - 16 76 - -
Cca04g00126 1039 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Cca04g00126 1039 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Cca04g00126 1039 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Cca04g00126 1039 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Cca04g00126 1039 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Cca04g00126 1039 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Cca04g00126 1039 SFLD p-type atpase 433 805 IPR044492 -
Cca04g00126 1039 SUPERFAMILY HAD-like 450 858 IPR036412 -
Cca04g00126 1039 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g00126 1039 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g00126 1039 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g00126 1039 SUPERFAMILY Calcium ATPase, transmembrane domain M 115 1014 IPR023298 -
Cca04g00126 1039 Pfam Cation transporter/ATPase, N-terminus 115 183 IPR004014 -
Cca04g00126 1039 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00126 Cca-Chr4 1178447 1186088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00126 57 1039 Primary Pumps ATPases AT3G57330 70.020 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00126 K01537 - gmx:100801260 1799.64