Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00118 ATGGGGTACCTGTACCTCTCGTGCAGAGCCGAATCCGCAGTCTCAACCTCGAATTCGGTGAAGGAGAAAGAGAAAGAGAAGAACATAAAGATCCAAGAGTTTGAGTACAGCGACCTTGAAGCGGCGACGAATGGGTTCTCCGAGCGCAAGCTCCTGGGCAAAGGCAGCCACGGGTACGTGTACAAGGCGGTGGTCCGGGGGCGTCCGGTGGCGGTGAAGCGCCCCTCGCGGCCCCACCAGATGACGAACGAGGTGGACAACGAGATCGACATCTTGTCCAAAATCCAGAGTCCGAGGTTGGTGAATTTGGTCGGTTTCACCAGCAACGATTCTAAAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGCACCCTTTACGACGTTCTTCATTCCTCTCCAAGGCCTCCCAATTGGGGTAGAAGGATTCGTCTGGCTCTTCAAACTGCTAAAGCCATCGACATTCTTCACTCCTCAACGCCCCCTGTGATCCACCGTGACATTAAATCCGCTAATGTTTTAATCGACCGGAGCTACAATGCTAGGTTAGGTGACTTTGGTTTGGCCCTTAGAGGCCATGTTGATGATTACAAACTCAGGTCCACTCCCCCTGCTGGCACCATGGGTTACCTTGACCCTTGTTATGTCACTCCTGATAATTTGAGCACCAAGACTGATGTTTTCAGTTTTGGGATTTTGCTTTTGGAGATTATAAGTGGAAGGAAGGCCATTGATATCACTTATTCCCCTCCTTCCATTGTGGATTGGGCCATTCCTCTTATCAAAAAAGGGAAATTGTTGGGTGTGTATGACCCCAGGATAGCACCCCCTAAGGATCCGCTCGTCAGGAAGCAACTGGCTGTCATTGCTGCCAAGTGTGTCAGGTCTTGTAGGGAGAGGAGACCCTCCATGAGTGATGTTGTCATTTGGCTTTGTGGCTTGTGGCGCCCTGTTGAAGCGCCAAGGACTGCTCAATTTGGTTTGGAGGGAGGGAACTTTGATTTCTCCAAGTCTGCAATGAGTACAATTCTTGTAATTTTGTTACTGTGTTCCTATTTCACGTGCAATTCTTTATACACCAACAAAATTATGCTTTTGCCACACAACTTGAACAAGTCACTTCAGAGACGCTATTAA 1137 0.4908 MGYLYLSCRAESAVSTSNSVKEKEKEKNIKIQEFEYSDLEAATNGFSERKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHQMTNEVDNEIDILSKIQSPRLVNLVGFTSNDSKDRLLVVEFMSNGTLYDVLHSSPRPPNWGRRIRLALQTAKAIDILHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYKLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLGVYDPRIAPPKDPLVRKQLAVIAAKCVRSCRERRPSMSDVVIWLCGLWRPVEAPRTAQFGLEGGNFDFSKSAMSTILVILLLCSYFTCNSLYTNKIMLLPHNLNKSLQRRY 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00118 378 ProSitePatterns Protein kinases ATP-binding region signature. 52 73 IPR017441 GO:0005524
Cca04g00118 378 Gene3D Transferase(Phosphotransferase) domain 1 121 322 - -
Cca04g00118 378 Gene3D Phosphorylase Kinase; domain 1 7 120 - -
Cca04g00118 378 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN 1 327 - -
Cca04g00118 378 SUPERFAMILY Protein kinase-like (PK-like) 29 311 IPR011009 -
Cca04g00118 378 PANTHER OS01G0750732 PROTEIN 1 327 - -
Cca04g00118 378 Pfam Protein tyrosine and serine/threonine kinase 49 308 IPR001245 GO:0004672|GO:0006468
Cca04g00118 378 ProSiteProfiles Protein kinase domain profile. 46 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00118 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Cca04g00118 378 SMART serkin_6 46 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00118 Cca-Chr4 1096575 1099099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00118 24 311 Receptor kinase-like Gene Family AT3G59420 45.118 1.57e-75 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca04g00118 PK_Tyr_Ser-Thr 2.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00118 - - gmx:100805692 583.948