Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00101 ATGAAGAGATTGAGGTCGAGCGAGGATCTTCACTCCTACGGAGAGAAGAACAGTGGTTGCAAGGATTCGAATCTGAACCGTTCGTTCTCCTCCGCGCAGAGGACTTTCTACTACAAGCAGGAGAATGCGCGGAAGGGTTTGGTgtcgtcgtcgtcgtcgtcgtcgCGCTACGAGAGGGATCGGACGGTGGAGGAGGATCGGGAGGGTTCGCGCGTGGTTCGGAAGCGATCGGAGCACGATTTCGAGGGTTTCGATCGGAGGAAGGGGTTCGATCGGTACAGGGAGAGCGAGAGGGGTTTGATTCACCGGTCGGAGAGTTTCTGCGGCGGTGGTGGGTCGCGGCGGGATCAGTTTCCGAAGGGGTTTCGGTCggagagggagcggtcgaggagggaggggagcgtgtcgtcgtggcggagagggttgaaggatttggatgagagggagagggagagggagagagTGGTGCGTTCTCCTAAGGGTTTGAGGGATGTGAAATCTCCTTCGTGGTCTAAGGATTCTGTTTCCGAGAGCGAGCAATCTAAGAAGAGATCTTCTTCTTCTCCGAGACCCTTCAGAGATGCTAACTCTGCTAAGTCTAAGTCCAAGTCTCCCACTTGGTCTAAGGATTCCGATTGCGAGCAGTCCAAGAGTGTTGAGGTAAAGAAGACTGAGGAGGAGTCGTTGCAGCAGGTTCAGAGCGGAAGTAGTAGTGAGATGGAggaaggggagctcgagcctgaaccgcaaccggaaccggTTCTTCCTTCGGGTGAAGACTTGCCCTCTGTTACTCTGGAGACTGatgagaagcaggttcagaatgagaatgagaatgaATGTCGCCCTGATGGTGACACTGATGCTGTTATGGAGGAGAGGCAGGAGTTGTCGAGTAAGGAGGAAGTGAAACCTGATGAGGAGGTTGGTTGCGAGGTAAAGGATGCAGAGAAAGAGGTTGATAAGCTGCCGGATGTCCAGGATGATCCGACTGAGGAAATGGTTGTTACTGAGACTGATGTTGGGTCTGTGGGTAATGGGGATGGTGATAGAGAGGAGTGTTTGGATGCAGGTGGTGCTGAGTGCGAGGAGGAGGAAGCAAAGAAGGATGCGGATTTGGAAAAGGAGAAGGTGGTGTTGTTGAATGAAGAGGAGCAGAAGCAGGACAAGGCTGTAGGTCAAGAAACCAGCATGGATGTTGTCAAGCCCGAGTCAAATGATGAGGTTTCAACAGGAAATGAAACTCCCAAGCATGTGGATAGAGAAACGATGATGGAGGGTTTGATCAACAATGTAAAGGATAAAGGCAAAGGTGTCTCTGTTGCATTTGTACCTACTGACGTTGCTCATTCTGCAGAAGATGGCCTGTGGATTGATAGAGGGTCGAGAGACTTCCCAACGTGTTCTGTTGATGTTATAGAAGGTCCAAGCACGAGGGGATTCGAGTTGTTTTCCAGATCTCCTGTTAGAAAAGTGGAGAAAGTTGACCACTCCGTTCTCAACGATCATAAGGATGACATGGAACAGCTTGATCTTACTCTTAGCTTGCCGAATGTTCTGTTACCTATTGGTGCTCATGAGACAACATCGCAAGCCCCTGGATCCCCCAGTCAAGCACGGAGTGTGCAGTCTTTAAGTAATACATTCTGTACTAACTCTGATGGTTTTACTGCATCAATGTCCTTTTCTGGTTCTCAGTCATTGTATCACAATCCAAGCTGTTCTCTGACCAAAAATTCCGTGGACTATGAACAATCTGTTGGCAGTCGCCCCTTATTCCAGGGAATAGACTGGCAAGGTCTGTCTCAAAGTGATCCCAAGCAGAAAGAAGTTCCTTTTGGTCAAAGAACTTCGGCAAATGGAAATGGCTCCCTTTACCAGTCTCAGGCATCATGGGGTGCTTTAGACAGTCAAGCTGTGAAGGGTCAACATTCCAGGGTTCTAGAGGGGAGTTCAAAAATGGGCGGTGGAATAGACAGGCAATTGAGTTTTCATAAGCAGTTTTCAGGACAGTCAAGACGCCTTGATGATGTTAGGTCTCCGTCACAGAGTGTTGGGTCTCATGACATTGGATCAAATTATAGCTTTGAGAAAAAGAGGGAGGTTAGAGACAGGAGTACTGGTAGTCTGTATCGAACTACCAGCCAGAAGGAACAAGAACAACTTCTGATGGGTGGAGTTGATTTTGTTGAGACAAACATTGCTAGAATAGTATCTGAACCTGTTCATGCAATGTCCAGAAAGTTTCATGAAATGACCGGACAGTCCTTAGTATCTCTGAAAGAGGGTATTCGTGAAATCATGCTCAATGCAGATAAGCATGGGCAAATACTGGCTTTTCAGAAAGTTCTGCAGAACAGGTCTGACATAGTCTTGGATGTCCTGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTCTTTGATGTCCTGCTGAAATGCCATCGAGTGCAATTGGAAATTTTGGTTGCTTTAAAAACTGGTTTGACTCATTTTCTTCACCTAGACAACAGCATTTCATCTTCTGAGTTGGCTCAAATTTTTCTGAACTTAAGGTGCAAGAATCTTTCATGTCGAAGTCAGTTGCCCGTGGATGAATGTGATTGCAAGGTTTGTGCGCAGAAGAATGGTTTTTGCAGGGAATGTATGTGCCTTGTGTGTTCCAAGTTTGACAATGCCTCAAATACATGTAGTTGGGTTGGATGTGATGTTTGCCTTCATTGGTGCCATACTGATTGTGGATTACGGGAATCTTATATTAGAAATGGGCATGGGACAAAAGGGATGACGGAGATGCAGTTTCACTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTGAAGGAGGTATTTCATAATTTTGCAAAAGATTGGTCCGTTGAAGCCCTTTGCAAAGAGCTTGAATATGTAAAGAGGATTTTTTCTGCCAGCAAGGATATGAGAGGGAGACAACTATACGAGATTGCAGAGCAAATGCTGCCAAGGTTGGCAAATAAGTCTAATCTTCATGAGGTTTTGAGGCACATCACGTCTTTCCTTACGAATGGTGATCCTTCCAAATTACCCACGACAACTAACTTTTCTGGGAAGGAACAAATTAAAGAAAACAATGGAGTAGCTGGGCCTAGCCAGGAAGTGGCTTGGATGAAATCTATTTATTCAGAAAAGCCACCTCTGTTAGAAAGGCCTGCAAATATCCTTCCTAGCTTTGGCCAGAATGATAAGAGAACTTTTGGGCAAGAGTTGCAGATGAGTAGTATCCAGAAGGACTTCTGTTTTGATGAGTTGGAGAGTATAGTTAAAGTTAAACAGGCAGAGGCTAAAATGTTTCAGTCTCGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTGAAACGCATTGCTGTGGCAAAGAGTGAGAAAATTGAGGAAGAATATGCCAATCGAATTGCCAAGTTGCGATTGACCGAGACTGATGAAATTCGAAAACAAAAATTTGAAGAACTCCAAACATTAGAGAGGGCACATATGGAGTATTTGAACATGAAAAGGAGAATGGAAACAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAAATGAGCCTTGCCATGTGA 3705 0.4154 MKRLRSSEDLHSYGEKNSGCKDSNLNRSFSSAQRTFYYKQENARKGLVSSSSSSSRYERDRTVEEDREGSRVVRKRSEHDFEGFDRRKGFDRYRESERGLIHRSESFCGGGGSRRDQFPKGFRSERERSRREGSVSSWRRGLKDLDERERERERVVRSPKGLRDVKSPSWSKDSVSESEQSKKRSSSSPRPFRDANSAKSKSKSPTWSKDSDCEQSKSVEVKKTEEESLQQVQSGSSSEMEEGELEPEPQPEPVLPSGEDLPSVTLETDEKQVQNENENECRPDGDTDAVMEERQELSSKEEVKPDEEVGCEVKDAEKEVDKLPDVQDDPTEEMVVTETDVGSVGNGDGDREECLDAGGAECEEEEAKKDADLEKEKVVLLNEEEQKQDKAVGQETSMDVVKPESNDEVSTGNETPKHVDRETMMEGLINNVKDKGKGVSVAFVPTDVAHSAEDGLWIDRGSRDFPTCSVDVIEGPSTRGFELFSRSPVRKVEKVDHSVLNDHKDDMEQLDLTLSLPNVLLPIGAHETTSQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSVDYEQSVGSRPLFQGIDWQGLSQSDPKQKEVPFGQRTSANGNGSLYQSQASWGALDSQAVKGQHSRVLEGSSKMGGGIDRQLSFHKQFSGQSRRLDDVRSPSQSVGSHDIGSNYSFEKKREVRDRSTGSLYRTTSQKEQEQLLMGGVDFVETNIARIVSEPVHAMSRKFHEMTGQSLVSLKEGIREIMLNADKHGQILAFQKVLQNRSDIVLDVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFDVLLKCHRVQLEILVALKTGLTHFLHLDNSISSSELAQIFLNLRCKNLSCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHGTKGMTEMQFHCIACDHPSEMFGFVKEVFHNFAKDWSVEALCKELEYVKRIFSASKDMRGRQLYEIAEQMLPRLANKSNLHEVLRHITSFLTNGDPSKLPTTTNFSGKEQIKENNGVAGPSQEVAWMKSIYSEKPPLLERPANILPSFGQNDKRTFGQELQMSSIQKDFCFDELESIVKVKQAEAKMFQSRADDARREAEGLKRIAVAKSEKIEEEYANRIAKLRLTETDEIRKQKFEELQTLERAHMEYLNMKRRMETDIKDLLSKMEATKMSLAM 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00101 1234 MobiDBLite consensus disorder prediction 648 699 - -
Cca04g00101 1234 PANTHER PROTEIN OBERON 4 841 1233 - -
Cca04g00101 1234 Coils Coil 796 796 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 40 78 - -
Cca04g00101 1234 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 797 IPR004082 -
Cca04g00101 1234 Coils Coil 1197 1217 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 1 26 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 345 392 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 57 78 - -
Cca04g00101 1234 Pfam Coiled-coil region of Oberon 1108 1222 IPR032535 -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 101 395 - -
Cca04g00101 1234 CDD PHD_OBE1_like 916 972 - -
Cca04g00101 1234 Coils Coil 364 384 - -
Cca04g00101 1234 Coils Coil 1135 1162 - -
Cca04g00101 1234 Pfam PHD - plant homeodomain finger protein 886 1006 IPR032881 -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 40 56 - -
Cca04g00101 1234 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 841 1233 IPR004082 -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 190 204 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 597 626 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 1 16 - -
Cca04g00101 1234 PANTHER PROTEIN OBERON 4 1 797 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 118 161 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 271 329 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 205 227 - -
Cca04g00101 1234 MobiDBLite consensus disorder prediction 664 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00101 Cca-Chr4 904458 909097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00101 886 1031 PHD Gene Family AT5G57380 27.397 8.27e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00101 - - gmx:100817003 1870.13