Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00099 ATGGCATTCATCGTGTCTAGCTTAGTCCATTACAGGGCGTGGTCTGAGAAAACACAGCACAAGTTTGAAGACACGTGGCAGGAGCAACGGCCAACTGAGATGGTCTTAGGAAAAGAGAAGAAAGAAATGACTGGTTTGGGCATTGGTGTTGCAAGCATGAAAGCTGGGGAGCGTGCATTGCTGCATGTGGGCTGGGAATTAGGATATGGAGAGGAAGGCAGCTTTTCTTTTCCAAATGTTCCACCCATGGCAGATTTAGTTTATGAAGTTGAGCTCATAGGCTTTGATGAAACAAAGGAAGGGAAAGCTCGCAGTGATATGACCGTGGAGGAAAGGATTGGTGCCGCAGACCGGAGGAAGATGGATGGAAATGCTTTGTATCAGGATGGAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCGTATATGGGAGATGACTTCATGTTCCAGTTGTTTGGAAAGTATAGAGATATGGCTCTGGCTGTAAAGAACCCATCCCATCTTAACACAGCAGCCTGTTTAATTAAGCTGAACCGCTACGAAGAAGCTATAGGACAATGTACCATCGTACTAGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAAGGAAGATTTTCTAAAAGCACGTAAATATGCCCCCGAAGACAAAGCAATTGCAAAAGAATTGAGGTTGCTTGCTGAACATGACAAGGCTGTTTACCAAAAGCAGAAAGAGATTTACAAAGGAATATTTGGACCAAGACCTGAACCAGTACCTAAGAGAAGAAATTGGCTCATCCTTATTTGGCAGTGGTTGCTTTCAGTATTCTATCGCCTTCTCACGCTCTTCAAGCGTGAAAGCCATAAATCTGACTGA 912 0.4463 MAFIVSSLVHYRAWSEKTQHKFEDTWQEQRPTEMVLGKEKKEMTGLGIGVASMKAGERALLHVGWELGYGEEGSFSFPNVPPMADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALYQDGKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPSHLNTAACLIKLNRYEEAIGQCTIVLGEDENNVKALFRRGKARAALGQTDAAKEDFLKARKYAPEDKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPEPVPKRRNWLILIWQWLLSVFYRLLTLFKRESHKSD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00099 303 Gene3D - 6 97 IPR046357 GO:0003755
Cca04g00099 303 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 7 264 - -
Cca04g00099 303 Gene3D Tetratricopeptide repeat domain 98 229 IPR011990 GO:0005515
Cca04g00099 303 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 9 93 IPR001179 GO:0003755
Cca04g00099 303 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 9 96 IPR001179 GO:0003755
Cca04g00099 303 SUPERFAMILY FKBP-like 9 102 - -
Cca04g00099 303 SUPERFAMILY TPR-like 108 259 IPR011990 GO:0005515
Cca04g00099 303 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Cca04g00099 303 Pfam Tetratricopeptide repeat 202 233 IPR019734 GO:0005515
Cca04g00099 303 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP42-RELATED 7 264 - -
Cca04g00099 303 SMART tpr_5 167 200 IPR019734 GO:0005515
Cca04g00099 303 SMART tpr_5 116 149 IPR019734 GO:0005515
Cca04g00099 303 SMART tpr_5 201 234 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00099 Cca-Chr4 888957 893204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00099 39 263 Calmodulin-binding Proteins AT3G25230 34.956 6.28e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00099 - - gmx:100790587 560.066