Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00097 ATGGCAGTAGCGATAACCCAATGTTCAGAAAAGCTAGGGTACCTGATACTTCAACTAGGGAAAAATTTCCTTGTGTTCATGGCGATGGTGATTGCATGCAACGGGGCACATTACGTACTAAAGCCGTACGCACAACCTCGCATTGCTTCTGACATAATAGTAGGACTAATTATGGGGAACATACCTTTTTTACGTAAACTATATGATGAATTCAACAGTACCTTTGGGTTTATCATTGATTTTGGCATGATGTGTTACATGTTTGCTTTGGGTATAGAGATGGATCCGTACGCACTGTTGAGAAGGCCAAGCAAGGATGCTCAAATAGCGTATTCAGGAATAATCTTCACCTTCGTGATATCGTGTTCCCTGACACCACTTCTGCATTACTTCACAGAAGAGCGTGGATTTGCGTTCATCCTGTGCCTCTCGGCGCTTGTCTCAAGCACAGCCTCTCCCGTTCTGACGCGTCTTTTAACGAACCTCAAGATAGGAAAATCGGATATTGGGAAGCTTGTGATAGGGGCAGGGATGCACGCAGATTTTGTGTGCTCGTTGCTTCTATCAGTAGGGTACATTTTCATGCCGGCGGAGGCATTCTGCGTAGGGCCTCAGCCTCATAGTCATGTGGAGAAGACGACGCAGTCGGTGATAACGATGAGTGTGGCGGTGGTGGCGCAGACGGTGTTCACGGGGCTGGTGTCGCCGGTGTTTATGGCGTGGGTTAACGATGAGAACCCAGAGGGGAGGCCGATGAAAGGTCCACATCTGGTACTGTCAATAGCCTTCGTGGTCATCATTTGTGCCTCTTCAACTCTATACAACTATAATCCGGTTCTAAGTGCGTTTATAACAGGGACTTGTTTTCCCCGGGAGGGAAGAGTTTCCAAATGGGTTGTCGGCAAGATAAACTATCTCTTGACCACCATCTTCTACCCGATATTCTTCTTGTGGATGGGTTATGCTGCTGATTTCACCAGGTTGGCCCCTGGAGACCCTGTGACGTGGCTCAGGCTTATTCTGCCCGTTGTCATGGCGGTCGTCGGTAAAGTTGCTGGCACGCTTGCTGTTGGGGCACTGCTTGGCTTCCACTGGCCAGAATCTCTTGTAATTGGCTTGCTACTCGTCACCAAGGGCCATTTTCAGATCTACATGGTTATCAAAGGGATCAATTGTGGCTCCACTATTTCCGCGGGCATTATGTCGGTAATTGCAACATTTCTCACAGTGGTGCATGCACCCATAATTGTGGCACATATCATCAAACGTGCCAGGAGAAGGGCACCTACTCACACCATGGCCCTCCAGTTGCTGGACCCGTCAAGTGAGTTAAGGATACTCTTGTGCGTTCACGGACCTCCCAATGTTCCTGCTTCCATCAACTTCATGGAGATTTCCAGAGGGACAACAGAACCGGGCCTTTTGGTTTATCTGGCAGAAATTATTGAATTAACTGATCAAATAGAAGCAACAGTAGAGACTGGTGAAGGAATACATGCATCAACTGTGAGAGACAAGGCAGTGATAGAGATGAGAGAACAAGTGACGAGCTCGTTCAAAGCCTATCTAGATAATGATGGCGATGGTATTACGCTCAAAAGATCATTGGCAATTTCAACAATCAACAACATGGCACAGAACATCTGCTCTTTAGCAGAGGAATTGATGATTGCCCTCATTATACTTCCATTCCACAGGAGCCAGCGTCAGGATGGAAAATTGGATGGTGGCAATCAAGGTTTTAGATATGTGAACCGAAAGTTATTGAAGACTGCTCCTTGCTCCGTGGGGATTCTTGTGAACAGAGGTTTTGGGTCCATTCCGAAAATATCAAGGTCTGAGGTAACACTACAAGTGGCAGCAATATTCATTGGTGGAAAAGATGATAGAGAAGTACTTGCATATGCGGGTCGTGTAGCATGGCATTCGGGAGTAAAAGTGACAGTAATAAGATTCCTGGTAGATACCAGTGCAGAATCCTCGAGACTGGCGGCTTATAGGGTAAGCCTGCCAGAGCAAGAGGAGGAGATGGGGTTGGATGACGAATGCTTTGCACAATTCTATGAAAAGCATATAGTTGCAGGTCGCATCCACTATATGGAGAAGCATCTTGCAAATGCGGGCGAGACATTTGCTACTCTGAGATCATTGGAAGGCCAATACTCACTGGTGGTTGTAGGAAGAGAAGGTGGGATAAACTCTATATTGACAAAGGGGATGAATGACTGGCAACAATGCCCAGAACTAGGACCGATAGGGGATGTTCTTTCAGGACCAGACTTCTCAACGTCAGTCTCTGTATTAATAATCCAACAACACAAACTTAGAGGAGAGCTAGATGGCCTTGACGAGGACTTCTCTATCatgtag 2370 0.4662 MAVAITQCSEKLGYLILQLGKNFLVFMAMVIACNGAHYVLKPYAQPRIASDIIVGLIMGNIPFLRKLYDEFNSTFGFIIDFGMMCYMFALGIEMDPYALLRRPSKDAQIAYSGIIFTFVISCSLTPLLHYFTEERGFAFILCLSALVSSTASPVLTRLLTNLKIGKSDIGKLVIGAGMHADFVCSLLLSVGYIFMPAEAFCVGPQPHSHVEKTTQSVITMSVAVVAQTVFTGLVSPVFMAWVNDENPEGRPMKGPHLVLSIAFVVIICASSTLYNYNPVLSAFITGTCFPREGRVSKWVVGKINYLLTTIFYPIFFLWMGYAADFTRLAPGDPVTWLRLILPVVMAVVGKVAGTLAVGALLGFHWPESLVIGLLLVTKGHFQIYMVIKGINCGSTISAGIMSVIATFLTVVHAPIIVAHIIKRARRRAPTHTMALQLLDPSSELRILLCVHGPPNVPASINFMEISRGTTEPGLLVYLAEIIELTDQIEATVETGEGIHASTVRDKAVIEMREQVTSSFKAYLDNDGDGITLKRSLAISTINNMAQNICSLAEELMIALIILPFHRSQRQDGKLDGGNQGFRYVNRKLLKTAPCSVGILVNRGFGSIPKISRSEVTLQVAAIFIGGKDDREVLAYAGRVAWHSGVKVTVIRFLVDTSAESSRLAAYRVSLPEQEEEMGLDDECFAQFYEKHIVAGRIHYMEKHLANAGETFATLRSLEGQYSLVVVGREGGINSILTKGMNDWQQCPELGPIGDVLSGPDFSTSVSVLIIQQHKLRGELDGLDEDFSIM 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00097 789 Gene3D - 21 430 IPR038770 -
Cca04g00097 789 PANTHER CATION/H+ EXCHANGER 3 4 787 - -
Cca04g00097 789 Pfam Sodium/hydrogen exchanger family 27 417 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca04g00097 789 PANTHER CATION/H + ANTIPORTER 4 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00097 Cca-Chr4 867302 870496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00097 24 789 Antiporter Super Family AT3G52080 49.296 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00097 - - gmx:100815945 1278.85