Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00091 ATGGAGAAGAACAACAGCAAAGTCTGCAAAATCTGCGATAAGTGTTTCTCCAATGGAAAAGCCATGGGAGGACACATGAGATCTCACTTTGCCAAATTGCCAATTCCTCCAAAGCCCGAAACCAAGAACCAAGCACTAGATAACTCAGCCGAGTTGACCTATCGTCCAAATCAATCTGCTTCCTCACAGACTTCTCAATCTCAAAAGAAACCAGCACAAAATTTCCGATCTTTGAAGCGCAGCCTTTTTTCCTTCTCAACAAACACAAATAGAGAAAATGAATTTAGGCCTTACCCTAAAAACCCAACCCGCAAAAGATCCAAATGCCACCGCAAATTTATTGCCGCGATAGAGATGAAAGCTGATTCAGAACAAGTGACTCCAAAACCAGACTCTCTTTTTGCAGAAGAAGCTGCTAGGTCTCTATTAATGCTTTCCAAGGACAAATGGCCAGAAAGCAAGGAGATCAAGAATCAAGAAGTGAAGGAAATTAGGGCAAAAGACAAAGAAGATGGTAGAGATGACTTGCTTGCTCAAATTCCATCTCAAGCCAACTTCAACAAGGAGATCAAGAATCAAGAAGTGAAGGAAATTAGGGCAAAAGACAAAGAAGATGGTAGAGATGACTTGCTTGCTCAAATTCCATCTCAAGCCAACTTCAAGTGTGATAAATGTGGAAAAATATTTCAGTCTCATCAGGCTCTTGGTGGGCACAAAGCAAACCATAAGAAAAATGAGAATACATGGCAAGGTGGTGACCCTGACAATGATGGAACTAGCAAAAAAAGTGATGATGTGGGTGAGAAAGTGTTCGAGTGTCCATACTGCTCAAAAGTATTTAAGTCTGCTCGAGCACTCGGTGGACACAAGAAGGTACACTTTTCATATAATAAGGCTAATGCTCAAAGTAGTGCTAATCAATTTGGTAGGAAGTTGGTAGTAGATCTCAATTTTCCAGCTCCTATAGAAGATTAA 975 0.4072 MEKNNSKVCKICDKCFSNGKAMGGHMRSHFAKLPIPPKPETKNQALDNSAELTYRPNQSASSQTSQSQKKPAQNFRSLKRSLFSFSTNTNRENEFRPYPKNPTRKRSKCHRKFIAAIEMKADSEQVTPKPDSLFAEEAARSLLMLSKDKWPESKEIKNQEVKEIRAKDKEDGRDDLLAQIPSQANFNKEIKNQEVKEIRAKDKEDGRDDLLAQIPSQANFKCDKCGKIFQSHQALGGHKANHKKNENTWQGGDPDNDGTSKKSDDVGEKVFECPYCSKVFKSARALGGHKKVHFSYNKANAQSSANQFGRKLVVDLNFPAPIED 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00091 324 MobiDBLite consensus disorder prediction 42 96 - -
Cca04g00091 324 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Cca04g00091 324 Gene3D Classic Zinc Finger 218 293 - -
Cca04g00091 324 SMART c2h2final6 271 293 IPR013087 -
Cca04g00091 324 SMART c2h2final6 220 242 IPR013087 -
Cca04g00091 324 SMART c2h2final6 7 29 IPR013087 -
Cca04g00091 324 MobiDBLite consensus disorder prediction 29 108 - -
Cca04g00091 324 ProSitePatterns Zinc finger C2H2 type domain signature. 273 293 IPR013087 -
Cca04g00091 324 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 324 IPR044303 GO:0006355
Cca04g00091 324 Pfam C2H2-type zinc finger 270 293 - -
Cca04g00091 324 Pfam C2H2-type zinc finger 8 29 - -
Cca04g00091 324 Pfam C2H2-type zinc finger 220 244 - -
Cca04g00091 324 SUPERFAMILY beta-beta-alpha zinc fingers 220 293 IPR036236 -
Cca04g00091 324 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 324 - -
Cca04g00091 324 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Cca04g00091 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Cca04g00091 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 298 IPR013087 -
Cca04g00091 324 SUPERFAMILY beta-beta-alpha zinc fingers 7 34 IPR036236 -
Cca04g00091 324 MobiDBLite consensus disorder prediction 236 264 - -
Cca04g00091 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 247 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00091 Cca-Chr4 821885 822944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00091 9 324 C2H2 Transcription Factor Family AT3G60580 29.360 5.72e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g00091 zf-C2H2_6 2.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00091 - - ccaj:109798515 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00091 04 821885 822944 Cca04g00091 04 821885 822944 ECH