Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00089 ATGGAAGCGGCGGTGGTGGACGTCGGCTCTAAGCTCCTCAAAGCGGGTTTTGCAATTCCCGACCAGACTCCCGCCATGATAATTCCCACTCAGATGAAACAAATGCTTGATGATGGATCAGTCACTGATAACTCACCGGCTGACAATGTCACCGTCGATCCAGTTGTGCGAGGATTTATTAGAGATTGGGATGCCATTGAGGATTTGTTGCACCATGTTTTATATTCGGGCCTTGGATGGGAAATTGGCAATGAAGGACAAATACTATTTACAGATCCACTTTGTACCCCAAAGGCCAACAAAGAGCAGTTGGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTATCGCTGTATGCTGTGGGACGTATCTCAGGATGCAGTGTTGATATTGGACATGGAAAAATAGATATTGCACCGGTAATTGAGGGAGCTGTTCATCACATTGCTTCAAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAGTCAAATCCACATGTAAATATCAGCCTGTCTGATGTGGAGAAAATAAAAGAGCAGTACTCGTGCTGTGCTGAAGATGAAGTAGCTTATCAGAAGATCCAATATTCTTGTCCTGTGGAGAAGCACACCCTTCCTGATGGACAGGTCATAACAATTGGGAGAGAAAGATACACTGTTGGGGAAGCTTTATTCCAGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTGCGTGCTATTTCAACTGTGTCATCTGATAACCAACGGCAGCTGCTGGAAAATACTGTAGTTTGCGGTGGCACTTCTTCCATGATTGGTTTTGAAGAGAGATTTCAGAAGGAATCTAGCTTAAGTTCATCTGCTGTTCAACCTACCCTCGTTAAGCCTCCAGAATACATGCCAGAAAACTTAACCATGTATTCTGCATGGGTGGGTGGTGCCATACTTGCCAAAGTGGTTTTCCCTCAAAATCAGCATATAACTAAGGGAGACTATGATGAAACCGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1086 0.4392 MEAAVVDVGSKLLKAGFAIPDQTPAMIIPTQMKQMLDDGSVTDNSPADNVTVDPVVRGFIRDWDAIEDLLHHVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCSVDIGHGKIDIAPVIEGAVHHIASRRFEFGGTDLTNFLAQELGKSNPHVNISLSDVEKIKEQYSCCAEDEVAYQKIQYSCPVEKHTLPDGQVITIGRERYTVGEALFQPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGGTSSMIGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKGDYDETGPSIVHRKCF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00089 361 PRINTS Actin signature 45 67 IPR004000 -
Cca04g00089 361 PRINTS Actin signature 100 113 IPR004000 -
Cca04g00089 361 PRINTS Actin signature 125 144 IPR004000 -
Cca04g00089 361 PRINTS Actin signature 217 233 IPR004000 -
Cca04g00089 361 SUPERFAMILY Actin-like ATPase domain 2 136 IPR043129 -
Cca04g00089 361 Pfam Actin 2 361 IPR004000 -
Cca04g00089 361 Gene3D - 123 324 - -
Cca04g00089 361 PANTHER ACTIN 1 360 IPR004000 -
Cca04g00089 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Cca04g00089 361 Gene3D - 5 355 - -
Cca04g00089 361 PANTHER BNACNNG31150D PROTEIN 1 360 - -
Cca04g00089 361 SMART actin_3 1 361 IPR004000 -
Cca04g00089 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Cca04g00089 361 CDD NBD_sugar-kinase_HSP70_actin 4 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00089 Cca-Chr4 798851 805795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00089 5 361 Cytoskeleton Gene Families AT3G12110 37.333 5.30e-70 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00089 K16615 - gmx:100813266 702.59