Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00085 ATGAGCAACCATACATGTTATCATGCATGTCTTGCAATACAAACTACGTTTCTGATTTTGCTGGCTCTTTGTCAAGCCACTTCAGGGCAAACACAAGCCGAGGCCCTTCTCAAGTGGAAACAAAGTCTTCCCAACCAACCCATTTTGGATTCATGGGTGATGAATTCCACTACTAGCCCATGTTCATGGAGAGGTATTACTTGTGACTCTCAAGGCACTGTCACAATAATAAACTTGGCTTACACAGGACTCACAGGTACCCTTCAAAACTTGAACTTTTCTTTTTTCCCCAACCTTCTACGTCTTGATCTCAAAGAAAACAACCTCACTGGCCCCATACCACAAAACATTGGAGTCCTCTCAAACCTCCAATTCCTTGACCTTTCCTCCAACTATCTCAATGGCTCTCTTCCTCTTTCCATTGCCAATTTGACTCAAGTTCATGAGCTTGATGTTTCAAGAAATGATATAACAGGGATACTAGACCCTCGCTTATTTCCTGATGGATCTGATAGCCCCAAAAGTGGACTAATTGGTATCAGGAATCTCCTCTTCCAGGATACCCTTCTAGGTGGCACAATCCCAAATGAAATAGGTAACATAAGAAACTTGACTCTGCTAGCTTTAGATGGAAACAACTTCTATGGGCCTATTCCTCCTTCTCTAGGCAATTGCACACATCTAAGCATTCTTAGAATGCCTGAAAACCAACTCACAGGTCCAATACCTCCAAGTATTGGTAAATTGACCAACTTAACTGATGTGAGGTTTCAAATTAACAACTTAAATGGTACGGTGCCACGAGAATTTGGAAACTTGTCTTCCTTGATTgtgctgcatcttgctgagaacaactttgttggtgaattACCACCACAAGTGTGCAAGAGTGGCACACTTGTGAATTTCAGTGCAGCCTACAATAGCTTCACTGGCCCACTTCCAATGAGTCTTAGAAACTGCCCTGCCTTGTATAGAGTTAGACTTGAATACAACCGGTTGTCAGGTTATGCAGATCAGGATTTTGGAGTGTATCCTAACCTCACTTATTTGGACTTCAGCTATAATAGAGTGGAAGGTGACATCTCTCCAAATTGGGGTGCTTGCAAAAACTTGCAATCTCTCAACATGGCTGGGAATGCAATTAGTAGCAACATTCCAGGTGAGCTTTTTCAGTTGGACCAACTACAAGAGCTTGACCTATCCTCAAACCAAATATCAGGAGAGATTCCACCACAGATAGGAAACTCCTCCAACTTGTATGAATTGAATTTGAGTGACAATAAACTCTCTGGGATGGTACCACCAGATATTGGAAAGCTTTCCAATTTGAGATCCTTAGACCTCTCTATGAACATGCTGTTGGGACCAATCCCAAATCAATTAGGGGACATCTCCAACTTGCGGAATTTAAATCTGAGCAACAATGACTTTAATGGCACAATCCCCTACCAAGTTGGAAACCTTGCACAATTACAAGATTTTTTGGACTTGAGTTACAATTCACTTTCAGGAGAAATTCCTTCTGATGTTGGGAGGCTTTCAAATTTGATAAGCTTGAATATTTCTCACAACAATCTGTCAGGTTCTATCCCTGACACAATTAGTAAAATGTTGAGTTTGTCAGCCATCAACCTCTCTTACAACAATTTGGAGGGTCCAGTTCCCGAAGGTGGAATATTCAACTCTTCTCATCCCCTTGATTTGAGCAACAACAAAGGTTTATGCGGAAATATTCAAGGTTTGCAACCTTGTAATGTCTCTCTCACTAAACCTGATGGTAGATCAAGTAACAAAAAGAAGGTTGTGATCCCTATTGTTGCTTCCTTGGGAGGTGCTCTTTTTGTTTCTTTGGTGTGCATTGGGAGTGTTTTCTTTTGCTATAAGAGAAATTCAAGAACTCGAAGGCAAAAAAGTTCAATCAAAATACCAAATCCATTTTCCATTTGGTACTTTAATGGTAGAGTTGTGTATGGAGACATAATAGAAGCTACCAAGAACTTTGACAACCAGTATTGCATTGGGGAAGGAGCACTAGGAAAAGTTTACAAAGCGGAGATGAAAGGACGTCAAGTATTTGCTGTAAAGAAGTTGAAGTGTGATGCAGATAACTTGGACGTTGAGAGTATAAAAAACTTTCAGAATGAGGTTGAAGCCATGACAGAAACACGCCACAGAAACATTGTCAAGCTATATGGATTTTGCTGTGAAGGGATGCACACTTTTTTAATTTATGAATATATGGATAGAGGGAACTTATCTGAAATGCTGAGAAATGACACGGATGCATTGGAACTAGATTGGCCTAAGAGGGTTGACATTATCAAAGATGTAGCAAGTGCTTTGTCCTATATGCATCATGATTGTGCTCCACCTTTAATCCACAGAGACATATCAAGCAAGAATATTTTACTGTCCTCCAATCTGGAAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCGGATTCGCCTATTTGGACATCATTTGCCGGCACATTTGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGCAGTGACCGAGAAATGTGATGTGTTTAGCTTTGGCGTTTTGGCTTTTGAGGTGCTTACGGGAAAGCACCCTGGTGACCTTGTTTCCTACATACAAACATCTAGTGAGCAGAAAATAAACTTCAAAGAGATTTTAGACCCTCGCCTCTTGCCTCCTCCTAAGAGCCATATTTTGAAGGAATTGGCATTGATTGCCGACCTAGCACTTTCATGTCTACAAACAAATCCTCAATCTAGACCAACTATGCGGAGCATAGCTCAGCTCCTTGAAATGGAGACTGCAGAGCAGACATGA 2835 0.4063 MSNHTCYHACLAIQTTFLILLALCQATSGQTQAEALLKWKQSLPNQPILDSWVMNSTTSPCSWRGITCDSQGTVTIINLAYTGLTGTLQNLNFSFFPNLLRLDLKENNLTGPIPQNIGVLSNLQFLDLSSNYLNGSLPLSIANLTQVHELDVSRNDITGILDPRLFPDGSDSPKSGLIGIRNLLFQDTLLGGTIPNEIGNIRNLTLLALDGNNFYGPIPPSLGNCTHLSILRMPENQLTGPIPPSIGKLTNLTDVRFQINNLNGTVPREFGNLSSLIVLHLAENNFVGELPPQVCKSGTLVNFSAAYNSFTGPLPMSLRNCPALYRVRLEYNRLSGYADQDFGVYPNLTYLDFSYNRVEGDISPNWGACKNLQSLNMAGNAISSNIPGELFQLDQLQELDLSSNQISGEIPPQIGNSSNLYELNLSDNKLSGMVPPDIGKLSNLRSLDLSMNMLLGPIPNQLGDISNLRNLNLSNNDFNGTIPYQVGNLAQLQDFLDLSYNSLSGEIPSDVGRLSNLISLNISHNNLSGSIPDTISKMLSLSAINLSYNNLEGPVPEGGIFNSSHPLDLSNNKGLCGNIQGLQPCNVSLTKPDGRSSNKKKVVIPIVASLGGALFVSLVCIGSVFFCYKRNSRTRRQKSSIKIPNPFSIWYFNGRVVYGDIIEATKNFDNQYCIGEGALGKVYKAEMKGRQVFAVKKLKCDADNLDVESIKNFQNEVEAMTETRHRNIVKLYGFCCEGMHTFLIYEYMDRGNLSEMLRNDTDALELDWPKRVDIIKDVASALSYMHHDCAPPLIHRDISSKNILLSSNLEAHVSDFGTARFLKPDSPIWTSFAGTFGYAAPELAYTMAVTEKCDVFSFGVLAFEVLTGKHPGDLVSYIQTSSEQKINFKEILDPRLLPPPKSHILKELALIADLALSCLQTNPQSRPTMRSIAQLLEMETAEQT 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00085 944 ProSitePatterns Tyrosine protein kinases specific active-site signature. 793 805 IPR008266 GO:0004672|GO:0006468
Cca04g00085 944 SMART LRR_typ_2 393 417 IPR003591 -
Cca04g00085 944 SMART LRR_typ_2 514 538 IPR003591 -
Cca04g00085 944 SMART LRR_typ_2 441 465 IPR003591 -
Cca04g00085 944 SMART LRR_typ_2 273 297 IPR003591 -
Cca04g00085 944 SMART LRR_typ_2 120 143 IPR003591 -
Cca04g00085 944 SMART LRR_typ_2 144 168 IPR003591 -
Cca04g00085 944 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cca04g00085 944 SUPERFAMILY L domain-like 59 455 - -
Cca04g00085 944 Pfam Leucine Rich repeats (2 copies) 346 384 IPR025875 -
Cca04g00085 944 Gene3D Ribonuclease Inhibitor 300 591 IPR032675 -
Cca04g00085 944 Pfam Leucine Rich Repeat 516 537 IPR001611 GO:0005515
Cca04g00085 944 Gene3D Ribonuclease Inhibitor 29 169 IPR032675 -
Cca04g00085 944 ProSiteProfiles Leucine-rich repeat profile. 395 417 IPR001611 GO:0005515
Cca04g00085 944 SUPERFAMILY L domain-like 435 580 - -
Cca04g00085 944 ProSiteProfiles Protein kinase domain profile. 668 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00085 944 Gene3D Phosphorylase Kinase; domain 1 629 747 - -
Cca04g00085 944 Gene3D Transferase(Phosphotransferase) domain 1 748 944 - -
Cca04g00085 944 Pfam Leucine rich repeat 418 478 IPR001611 GO:0005515
Cca04g00085 944 PRINTS Leucine-rich repeat signature 396 409 - -
Cca04g00085 944 PRINTS Leucine-rich repeat signature 441 454 - -
Cca04g00085 944 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 3 940 - -
Cca04g00085 944 SUPERFAMILY Protein kinase-like (PK-like) 641 937 IPR011009 -
Cca04g00085 944 SMART serkin_6 668 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00085 944 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 940 - -
Cca04g00085 944 Pfam Protein kinase domain 673 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00085 944 Gene3D Ribonuclease Inhibitor 170 298 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00085 Cca-Chr4 764782 768076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00085 6 841 Receptor kinase-like Gene Family AT4G08850 39.744 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca04g00085 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00085 - - gmx:100814345 1630.54