Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00084 ATGTCCAACTCCAATCATGCATGTCATGCATGGCTAGCAATCCCAGCTACGTTGCTGGTTTTGCTGGCTCTTTGTGAAGGCACTTCTGGGCTAACACAAGCTGAGGCCCTACTCAGGTGGAAACAAAGTCTCCCTAACCAACCCATTTTGGATTCATGGGTGATGAATTCCACTACTAGCCCATGTTCATGGCGAGGTATTACTTGTGACACTCAAGGCACAGTGACTATAATAAACTTGGCTAGAGCTAAACTAGCAGGTACCCTTCGAAACTTTAACTTGTCCCTATTCCCTAACCTACTTCATCTTGATCTCAGTGATAACAGTTTCACTGGCCCCATACCACAAAACATTGGGCTGCTCTCAATGCTCCAATTCCTTGACTTTTCCGGCAATAATCTCAATGGCACTCTTCCTCTTTCTATTGCCAATCTCACTCAAGTTTATGAGCTTGATGTTTCAAGAAATCATATAACAGGGATATTAGACCCTCGCTTATTTCCAGATGGATCTGATGAGCCCAAAAGTGGACTCATTGGTATCGGGAATCTCCTCTTCCAGGACACCTCGCTAAGTGGCACAATCCCAAATGAAATAGGGAACATAAGAAACTTAACTCTGCTTGCTCTAGATGGAAGCCACTTCTATGGGCCTATTCCTTCATCTCTAGGCAACTGCACACACTTAAGCACCCTTAGAATGAGTCAAAACAATCTCACTGGCCCAATACCCCCAAGTATTGGTAAATTAACCAATCTAACCGAGGTCTTCCTTCATCAAAACCACTTAAATGGCACGGTGCCTCAAGAATTTGGAAACTTGTCATCCTTGGTTGTGCTGCATCTTGCTGAGAACAACTTTGTTGGTGAGTTACCACCACAAGTGTGCAAGAGTGGCACACTTGTAAATTTCAGTGCAGCCTACAATAGTTTCACTGGCCCAATTCCAATAAGCCTTAGAAACTGTCCAGCCTTGTATAGAGTTCGAATTGAATATAACAGGCTGACAGGTTATGCAGATCAAGATTTTGGAGTGTACCCTAACCTCACTTACATGGACTTCAGTTATAACAGGGTGCAAGGTAGGATTTCAGAAAATTGGGGGTCTTGCAAAAACTTGCAATCTCTCAACATGGCTGGGAATGCAATTAGTGGCAACATTCCAGGTGAGCTTTTTCAGTTGGACCAACTACAAGAGCTTGACCTATCCTCAAACCAAATATCAGGAGAGATTCCACCACAGATAGGAAACTCCTCCAAGTTATATAAGTTAAATTTGAGTGACAACAAGTTCTCTGGTCTGCTACCAGCAAAAATTGGAAGGCTTTCCAATTTGCAGTCCTTAGACCTGTCTAGGAACATGCTGTTGGGACCAATCCCAAATGAAATAGGGGATATCTCCAACTTGCAGAATTTAAATCTTAGCAACAATTACTTTAGTGGCACAATCCCCTACCAAGTTGGAAACCTTGCAGCTTTACAACAATTTTTGGACTTGAGTTACAATTCACTTTCAGGAGATATTCCTTCTAATCTTGGGAAGCTTTCAAACTTGATAAGCTTGAATATCTCCCACAATAATCTGTCAGGTTCTATCCCTGACCCCCTTAGTGACTTGTTGAGTTTGTTAGAAATCAACCTCTCCTACAATTATTTGGAGGGCCCAGTTCCTAAAGGTGGCATATTCAACTCTTCTCAGTTCCTAGATTTGAGCAAAAACAAAAATTTATGTGGGAATATTCGAGGTTTGAATCCTTGTAATGTCCCTCACACTAAACCTGATGGGGGATCAAGGAACAAAAACATGCTTGTGATCCCTATTGTTGCTTCCTTGGGAGGTGTTCTTTTCCTTTATTTGGTGTTAGTTGGGATTATTTTCTTTTGCTATAAGAGAAAATCAAGAGCTCCAAGACAAAGAAATTCATTCAGATCGAATCCATTTTCAATTTGGCACTTCAATGGCAAAGTTGTGTATAGAGACATAATCGAAGCTACCAGGAACTTTGATGACCAATATTGCATTGGGGAAGGAGCACTGGGAAAAGTTTACAAAGCAGAGATGCAAGGAGGTGAAGTATATGCTGTAAAAAAGTTGAAGTGTGATTCAGACAACATAGACATTGAGAGTATAAAATGCTTTCAGAATGAGGTTGAAGCCATGACAGAAACTCGCCACCGAAACATTGTCAAGCTATACGGATTTTGCTGTGAAGGGATGCACACATTTTTAATTTATGAGTATATGGATAGAGGGAACTTAGCAGACATGCTGAGAAATGACAAGGAGGCATTGGAACTAGATTGGCACAAGAGGGTTGATATTATCAAATGTGTAGCAAGTGCTTTGTCCTACATGCATCATGATTGTGCTCCTCCTTTAATTCACAGAGACATATCAAGCAATAACATTTTATTGTCCTCCAATCTGGAAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCTGATTCCTCTATTTGGACATCATTTGCTGGCACATATGGCTATGCTGCTCCAGAACTTGCTTACACAATGGCAGTGACTGAGAAGTGTGATGTATTCAGCTTTGGCGTTTTGGTTTTGGAGATTCTGACGGGAAAGCACCCTGGTGACCTTGTTTCATCCATGCAAACTAGTGGTGAACAAAAAGTAAACTTGAAGGACATTTTGGACCCTCGTCTCTCGCCTCCTTCCAAGAGGCATATTTTGAACGAATTGGATTTTATCGTAAATTTAGCTCTTTCATGTTTAAAAACAAACCCTCAATCTCGACCAACAATGCGAAGCATAGCTCAGTTGCTTCAAATGGATACTGCATAA 2826 0.4137 MSNSNHACHAWLAIPATLLVLLALCEGTSGLTQAEALLRWKQSLPNQPILDSWVMNSTTSPCSWRGITCDTQGTVTIINLARAKLAGTLRNFNLSLFPNLLHLDLSDNSFTGPIPQNIGLLSMLQFLDFSGNNLNGTLPLSIANLTQVYELDVSRNHITGILDPRLFPDGSDEPKSGLIGIGNLLFQDTSLSGTIPNEIGNIRNLTLLALDGSHFYGPIPSSLGNCTHLSTLRMSQNNLTGPIPPSIGKLTNLTEVFLHQNHLNGTVPQEFGNLSSLVVLHLAENNFVGELPPQVCKSGTLVNFSAAYNSFTGPIPISLRNCPALYRVRIEYNRLTGYADQDFGVYPNLTYMDFSYNRVQGRISENWGSCKNLQSLNMAGNAISGNIPGELFQLDQLQELDLSSNQISGEIPPQIGNSSKLYKLNLSDNKFSGLLPAKIGRLSNLQSLDLSRNMLLGPIPNEIGDISNLQNLNLSNNYFSGTIPYQVGNLAALQQFLDLSYNSLSGDIPSNLGKLSNLISLNISHNNLSGSIPDPLSDLLSLLEINLSYNYLEGPVPKGGIFNSSQFLDLSKNKNLCGNIRGLNPCNVPHTKPDGGSRNKNMLVIPIVASLGGVLFLYLVLVGIIFFCYKRKSRAPRQRNSFRSNPFSIWHFNGKVVYRDIIEATRNFDDQYCIGEGALGKVYKAEMQGGEVYAVKKLKCDSDNIDIESIKCFQNEVEAMTETRHRNIVKLYGFCCEGMHTFLIYEYMDRGNLADMLRNDKEALELDWHKRVDIIKCVASALSYMHHDCAPPLIHRDISSNNILLSSNLEAHVSDFGTARFLKPDSSIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLVLEILTGKHPGDLVSSMQTSGEQKVNLKDILDPRLSPPSKRHILNELDFIVNLALSCLKTNPQSRPTMRSIAQLLQMDTA 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00084 941 Gene3D Ribonuclease Inhibitor 176 388 IPR032675 -
Cca04g00084 941 Gene3D Ribonuclease Inhibitor 389 599 IPR032675 -
Cca04g00084 941 Gene3D Ribonuclease Inhibitor 31 169 IPR032675 -
Cca04g00084 941 SUPERFAMILY L domain-like 89 454 - -
Cca04g00084 941 ProSitePatterns Tyrosine protein kinases specific active-site signature. 793 805 IPR008266 GO:0004672|GO:0006468
Cca04g00084 941 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 940 - -
Cca04g00084 941 SMART LRR_typ_2 250 273 IPR003591 -
Cca04g00084 941 SMART LRR_typ_2 274 298 IPR003591 -
Cca04g00084 941 SMART LRR_typ_2 490 515 IPR003591 -
Cca04g00084 941 SMART LRR_typ_2 442 466 IPR003591 -
Cca04g00084 941 SMART LRR_typ_2 394 418 IPR003591 -
Cca04g00084 941 SMART LRR_typ_2 145 169 IPR003591 -
Cca04g00084 941 SMART LRR_typ_2 97 121 IPR003591 -
Cca04g00084 941 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Cca04g00084 941 Pfam Protein kinase domain 673 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00084 941 ProSiteProfiles Leucine-rich repeat profile. 517 540 IPR001611 GO:0005515
Cca04g00084 941 SUPERFAMILY L domain-like 415 578 - -
Cca04g00084 941 Gene3D Transferase(Phosphotransferase) domain 1 748 941 - -
Cca04g00084 941 SUPERFAMILY Protein kinase-like (PK-like) 648 936 IPR011009 -
Cca04g00084 941 Gene3D Phosphorylase Kinase; domain 1 630 747 - -
Cca04g00084 941 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 6 940 - -
Cca04g00084 941 ProSiteProfiles Protein kinase domain profile. 668 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00084 941 PRINTS Leucine-rich repeat signature 397 410 - -
Cca04g00084 941 PRINTS Leucine-rich repeat signature 442 455 - -
Cca04g00084 941 ProSiteProfiles Leucine-rich repeat profile. 396 418 IPR001611 GO:0005515
Cca04g00084 941 Pfam Leucine rich repeat 420 478 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00084 Cca-Chr4 759423 762924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00084 28 841 Receptor kinase-like Gene Family AT4G08850 39.650 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca04g00084 Pkinase 5.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00084 - - aprc:113866080 1452.96