Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00080 ATGCAAGTTGAAATTCAAAGTGAAGGAGAGGATTTTTTCAAGCCTGACATATATGGTGATGTTATCATTATTAATGTGGAGATTCCTTGTGTAATTACGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGGCCACGCATCTTCAGCAAGTCAATGATCTTAGGAAAAGCATTTCCAAGGAAATAATTGCTGCACACGATATAGTTGAAGAATTAGAGACTGCAATAAGGCCCGTAGAGAAGGAGCTTAACGAGCTGCAAGTTAAAATTAGAACTATGGAACATGTTGAACAAATATCCATACAGGTTCAACTATTAATGAAGAAACTTGCATGGTCATGGATTTATGGTGTGGACAATCAACTAGAGGAACAAAATATAAAGATTGAAAAGTTGAAGAATCTGATACCTACCTTCCAGGCTAAGATTGATCAACAACTGATATATTACACAGCAGCAGGCATCAGGCCACTGCGTGGAGAGTCTATGTTGGGAAGAATTAGAAGAGGTAGAGAAAGAATGATGAGGTGGCAGAGAAAGGATTACACAGCAGCAGGCATCAGGCCACTGCGTGGAGAGTCTATGTTGGGAAGAATTAGAAGAGAAGTGTTTGTTGGGACTCTAAATGAGGATATGGCCCCAATTGGTCAGATTACACAGCAGCAGGCATCAGGCCACTGCGTGGAGAGTCTATGTTGGGAAGAATTAGAAGAGCATGGTGAGGTAAAGAAGATGCAAATGGCCGCTCCATGTACTTGA 783 0.4023 MQVEIQSEGEDFFKPDIYGDVIIINVEIPCVITSQDKSREFLHSGNNKDKFKATHLQQVNDLRKSISKEIIAAHDIVEELETAIRPVEKELNELQVKIRTMEHVEQISIQVQLLMKKLAWSWIYGVDNQLEEQNIKIEKLKNLIPTFQAKIDQQLIYYTAAGIRPLRGESMLGRIRRGRERMMRWQRKDYTAAGIRPLRGESMLGRIRREVFVGTLNEDMAPIGQITQQQASGHCVESLCWEELEEHGEVKKMQMAAPCT 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00080 260 Coils Coil 77 97 - -
Cca04g00080 260 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 24 155 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cca04g00080 260 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 24 155 - -
Cca04g00080 260 Coils Coil 130 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00080 Cca-Chr4 718612 720964 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00080 3 155 Structural Maintenance of Chromosomes family AT5G07660 48.969 1.07e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00080 K22804 - gmx:100816916 222.631