Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00078 ATGAAAGCTGATTTAGAAGAAGTGACTCCAAAACCAAACTCTCTTCCTGCAGAAGAAGCTGCTAGGTCTCTATTAATGCTTTCCAAGAACAAATGGCCAGAAAGCAAGGAGATCAAGAATCAAGAAGTGAAGGAAATGAGGGCAAAAGACAAAGATGGTAGAGATGACTTGCTTGTTCAAATTCCATCTCAAGCCAACTTCAAGTGTGATAAATATGGAAAAATATTTCAGTCTCATCAGGCTCTTGGTGGGCACAAAGCAAACCATAAGAAAAATGACGTGGCAAAAAAAGTGATGATGTGGGTGAGAAAGTGTTCGAGTATCCATACTGCTCAAAAGTATTTAAGTCTGTTCGTCCACTCGGTGGACACAAGAAGATGTTCAGATTGTTCTTGGCTTATGAATTGA 408 0.3946 MKADLEEVTPKPNSLPAEEAARSLLMLSKNKWPESKEIKNQEVKEMRAKDKDGRDDLLVQIPSQANFKCDKYGKIFQSHQALGGHKANHKKNDVAKKVMMWVRKCSSIHTAQKYLSLFVHSVDTRRCSDCSWLMN 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00078 135 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 14 95 - -
Cca04g00078 135 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 14 95 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00078 Cca-Chr4 710781 713405 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00078 18 95 C2H2 Transcription Factor Family AT3G60580 37.179 2.20e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00078 - - ccaj:109798515 141.739