Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00076 ATGGAGGAATCCAGTTCTAGGGTTTCTCCCACTCTTCACCAGCCAACCGCTGGCATCATCAAGAGACTTCGACTCGAGAACTTCATGTGCCACTCCAAACACGAAACCGACTTTGGAAATCACGTCAATTTCATTACCGGCCAAAACGGAAGTGGTAAGAGTGCAATCCTGACTGCATTGTGTGTTGCATTTGGCTGTCGAGCGAAGGGGACTCAAAGGGCATCCACTTTGAAGGACTTCATTAAAACTGGTGCCAGTAATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGACATATATGGTGATGTTATCATTGTCGAACGTAGGTTATCTGAATCAACAAGTTCTACAACATTAAAAGACCACCAAGGTGTGAAAGTTGTCAGTCGGAAAGCAGATCTTCTGGAAATTGTTGAACATTTTAATATTGATGTAGAGAATCCATGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATAACAAGGATAAATTTAAGTTTTTTTACAAAGCCACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCAAGGAAATAATTGCTGCACATGATATAGTTGAAGAATTAGAGACTGCAATAAGGCCCATAGAGAAGGAGCTTCATGAGCTGCAAGGTAAAATTAGAACTATGGAGCATGTTGAACAAATATCCATACAGCAGTTAAAGAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAACAAAATATAAAGATCGAAAAGTTGAAGAATCGGATACCTACCTGCCAGGCTAAGATTGATCAACAACTGCATCGGATTGAAAAGTTGATGGAAAGCTGCTCCAAGAAGAGAGCTGAAATTAAAAGTATGTTGGCAACAACTTCAGAAGTTAAGCAAATGAAGGAAAATTTAAACCAATCTGTGTCCATGGCAAAGAAAGAGGCGTTTGTACTTGAGCGAGACTGCAAAAGCAAAACTGGCAACATACAGAAGATGATACAACAACTTAAAAAGCTTGAACAACAAGTACATGATATTCGTGAGCAGCACATAAAAAATACTCAGGCTGAAGAATCTGACAAGGAGGAGAAACTGAAAGGGCTTAAAGACGAGGTTCATGCTGCTGAGTTAGAGTTGAATAGATTGAAAGATGAAGATGCTTCGATAATGGATTGCATACATAGGCAAAATGAAGAAATCCAAAAGATAGCTGATAAGATCCGTGATCATGAAAAAAATCGTCATTACATCACGTGTCGAATCCGTGATCTTCAAAAACATCAAAGCAATAAGATTACTGTTTTTGGAGGAGAAAAAGTGATAGATCTGTTACGTATAATTGAGAGACACCACCAAAAGTTTAAGATGCCTCCTATTGGTCCAATTGGTGCCCACCTGAAGCTTCTTCATGGCAATAAATGGGCGGTTGCCCTTGAATATGCTATTGGGAAATTGCTGAATTCTTTTATAGTGACTGATCACACGGATTTTCGTCTTCTGAAACAATGTGCGAAGGAAGCAAACTATGGTCATCTTCAAATTATTATTTATGATTTTTCAACCCCAAGGTTGATGATGCCACAGCACATGCTTCCTGATACAGAACATCCATCAGTTCTTTCTGTCTTACAATGCGAGAATCATACTGTGATTAATGTCTTAGTTGATCTGGGAAATGTTGAGAGACAAGTGCTTGTTAATGATTATGAAACTGGGAAAGTGGTTGCCTTTGAACGAAGGATCCGAAACTTGAAGGAGGTCTATGCATCAAATGGATGTAGAATGTTTTCTCGAGGTTCAGTGCAGACTGTTCTTCCACCAAATAAGAAGCAAAGAACTGGCCGTCTTTGTGGTTCCTTTGAAGATGAGATTGAGAAACTTCATGCTGAAGCAGATGATGAACTAAAGGCAGCTGATGACTGTAAAAGGATTAAAAGAGCAGCAGAGGTAAAGCTGGAGGAGCTTGACAAGAAAGTGAATTCTATAAAGAGGCAATGTGTAAATGCTGGTAAAAGTTTCACTTCTAAGAAGGTAGCATTGGAGGAGGAAATGCATCTGCACACTGCTGAAAATAGTGCAACATCTTTGTCCACTGTTGATGAGCTCATTGAAGAAATTTCAGAAATCCAGAAAAATATAGATAAAGAGCAAGTCTTGTTGGAAGGCCTTCAGCAAAAGGGGTGTGAAGCAGCAGGAAAAGCAGACGATCTTAAAGTAAAATTTGACAAACTGTGTGAATCAGCAAACGATGAAATTGCAGCCCTAGAGAAATCTGAAAGTGATCTTGTTGAAATTGAAAAAGAAATGGATTCAGCAAAAAAGGCAAAGGAACATTATGAGGGTGTCATGAAAAACAAGGTTCTACTTGATATTAAGGAGGCAGAGGAGCACTATTTGGAGCTGACAAAGAGGCGTGAGGAAAGTGTTGAAAAGGCTTCCATAATTTGCTCTCAGAATGAACTTGATTCATTAGGAGGTTGTCATGGGAATACCCCAGAGCAAATTAGTGCTCAAGTAGAAAGACTAAATCAGACACTTAAGCGTGAGAGTCAAAGGTACTCTGAATCCATCGATGATCTTAGGATGCTGTATAAGAAAAAAGAGCGCAAGATTATGAAAAGGCAGCAAGTTTATAAAACCCTTCGCCAGAAATTGGATGCTTGCCAGAGAGCCTTAGAGTTACGACAGAGAAAGTTTAAGAGGAATGCAACTTATCTGAAGCACCAGCTTTCCTGGAAATTTAATGGCCATTTGAGAAAGAAGGGGATTAGTGGACTTATCAAAGTTAATTACGAAGAGAAAACCTTAATGATTGAGGTACAAATGCCCCAAGATGCATCAAACAGAGCTGTACGAGACACTAGAGGGCTTTCAGGCGGGGAACGTTCTTTCTCAACATTGTGCTTCGCGTTGGCCCTTCATGAAATGACAGAAGCCCCTTTTAGAGCAATGGATGAGTTTGATGTCTTTATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTGGTTGATTTTGCTGAGGCACATGGATCACAGTGGATATTCATCACCCCGCATGATACCAGCATGGTGAGGGCGGGGAACAGGATAAAGAAGATGCAAATGGCCGCTCCCCGTTCTTGA 3165 0.4013 MEESSSRVSPTLHQPTAGIIKRLRLENFMCHSKHETDFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIQVEIQNEGEDAFKPDIYGDVIIVERRLSESTSSTTLKDHQGVKVVSRKADLLEIVEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISKEIIAAHDIVEELETAIRPIEKELHELQGKIRTMEHVEQISIQQLKKKLAWSWVYDVDKQLEEQNIKIEKLKNRIPTCQAKIDQQLHRIEKLMESCSKKRAEIKSMLATTSEVKQMKENLNQSVSMAKKEAFVLERDCKSKTGNIQKMIQQLKKLEQQVHDIREQHIKNTQAEESDKEEKLKGLKDEVHAAELELNRLKDEDASIMDCIHRQNEEIQKIADKIRDHEKNRHYITCRIRDLQKHQSNKITVFGGEKVIDLLRIIERHHQKFKMPPIGPIGAHLKLLHGNKWAVALEYAIGKLLNSFIVTDHTDFRLLKQCAKEANYGHLQIIIYDFSTPRLMMPQHMLPDTEHPSVLSVLQCENHTVINVLVDLGNVERQVLVNDYETGKVVAFERRIRNLKEVYASNGCRMFSRGSVQTVLPPNKKQRTGRLCGSFEDEIEKLHAEADDELKAADDCKRIKRAAEVKLEELDKKVNSIKRQCVNAGKSFTSKKVALEEEMHLHTAENSATSLSTVDELIEEISEIQKNIDKEQVLLEGLQQKGCEAAGKADDLKVKFDKLCESANDEIAALEKSESDLVEIEKEMDSAKKAKEHYEGVMKNKVLLDIKEAEEHYLELTKRREESVEKASIICSQNELDSLGGCHGNTPEQISAQVERLNQTLKRESQRYSESIDDLRMLYKKKERKIMKRQQVYKTLRQKLDACQRALELRQRKFKRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEEKTLMIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSMVRAGNRIKKMQMAAPRS 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00076 1054 SUPERFAMILY Smc hinge domain 454 594 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Cca04g00076 1054 Coils Coil 712 739 - -
Cca04g00076 1054 Coils Coil 852 876 - -
Cca04g00076 1054 CDD ABC_SMC6_euk 20 174 - -
Cca04g00076 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 1045 IPR027417 -
Cca04g00076 1054 Coils Coil 804 824 - -
Cca04g00076 1054 Coils Coil 207 227 - -
Cca04g00076 1054 Gene3D - 19 218 IPR027417 -
Cca04g00076 1054 Coils Coil 651 678 - -
Cca04g00076 1054 Coils Coil 364 398 - -
Cca04g00076 1054 Coils Coil 406 426 - -
Cca04g00076 1054 Gene3D - 842 1050 IPR027417 -
Cca04g00076 1054 Coils Coil 891 911 - -
Cca04g00076 1054 CDD ABC_SMC6_euk 958 1054 - -
Cca04g00076 1054 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 15 1054 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cca04g00076 1054 Pfam RecF/RecN/SMC N terminal domain 20 1049 IPR003395 -
Cca04g00076 1054 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 15 1054 - -
Cca04g00076 1054 Coils Coil 761 795 - -
Cca04g00076 1054 Coils Coil 251 278 - -
Cca04g00076 1054 Coils Coil 335 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00076 Cca-Chr4 688675 706910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00076 1 1054 Structural Maintenance of Chromosomes family AT5G61460 57.561 0.0 1187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00076 K22804 - gmx:100816916 1746.1