Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00075 ATGGAGAAGAACAACAGCAAAGTCTGCAAAATCTGCGATAAGTGTTTCTCCAATGGAAAAGCCATGGGAGGACACATGAGATCTCACTTTGCCAAATTGCCAATTCCTCCAAAGCCCGAAACCAAGAACCAAGCACTAGATAACTCAGCCGAGTTGACCTATCGTCCAAATCAATCTGCTTCCTCACAGACTTCTCAATCTCAAAAGAAACCAGCACAAAATTTCCGATCTTTGAAGCGCAGCCTTTTTTCCTTCTCAACAAACACAAATAGAGAAAATGAATTTAGGCCTTACCCTAAAAACCCAACCCGCAAAAGATCCAAATGCCACCGCAAATTTATTGCCGCGATAGAGATGAAAGCTGATTCAGAACAAGTGACTCCAAAACCAGACTCTCTTTTTGCAGAAGAAGCTGCTAGGTCTCTATTAATGCTTTCCAAGGACAAATGGCCAGAAAGCAAGGAGATCAAGAATCAAGAAGTGAAGGAAATTAGGGCAAAAGACAAAGAAGATGGTAGAGATGACTTGCTTGCTCAAATTCCATCTCAAGCCAACTTCAAGTGTGATAAATGTGGAAAAATATTTCAGTCTCATCAGGCTCTTGGTGGGCACAAAGCAAACCATAAGAAAAATGAGAATACATGGCAAGGTGGTGACCCTGACAATGATGGAACTAGCAAAAAAAGTGATGATGTGGGTGAGAAAGTGTTCGAGTGTCCATACTGCTCAAAAGTATTTAAGTCTGCTCGAGCACTCGGTGGACACAAGAAGGTACACTTTTCATATAATAAGGCTAATGCTCAAAGTAGTGCTAATCAATTTGGTAGGAAGTTGGTAGTAGATCTCAATTTTCCAGCTCCTATAGAAGATTAA 873 0.4089 MEKNNSKVCKICDKCFSNGKAMGGHMRSHFAKLPIPPKPETKNQALDNSAELTYRPNQSASSQTSQSQKKPAQNFRSLKRSLFSFSTNTNRENEFRPYPKNPTRKRSKCHRKFIAAIEMKADSEQVTPKPDSLFAEEAARSLLMLSKDKWPESKEIKNQEVKEIRAKDKEDGRDDLLAQIPSQANFKCDKCGKIFQSHQALGGHKANHKKNENTWQGGDPDNDGTSKKSDDVGEKVFECPYCSKVFKSARALGGHKKVHFSYNKANAQSSANQFGRKLVVDLNFPAPIED 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00075 290 MobiDBLite consensus disorder prediction 89 108 - -
Cca04g00075 290 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 290 - -
Cca04g00075 290 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Cca04g00075 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Cca04g00075 290 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Cca04g00075 290 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 290 IPR044303 GO:0006355
Cca04g00075 290 MobiDBLite consensus disorder prediction 29 78 - -
Cca04g00075 290 MobiDBLite consensus disorder prediction 202 230 - -
Cca04g00075 290 Pfam C2H2-type zinc finger 236 259 - -
Cca04g00075 290 Pfam C2H2-type zinc finger 186 210 - -
Cca04g00075 290 Pfam C2H2-type zinc finger 8 29 - -
Cca04g00075 290 Gene3D Classic Zinc Finger 184 259 - -
Cca04g00075 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Cca04g00075 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Cca04g00075 290 SUPERFAMILY beta-beta-alpha zinc fingers 7 34 IPR036236 -
Cca04g00075 290 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Cca04g00075 290 SMART c2h2final6 7 29 IPR013087 -
Cca04g00075 290 SMART c2h2final6 237 259 IPR013087 -
Cca04g00075 290 SMART c2h2final6 186 208 IPR013087 -
Cca04g00075 290 MobiDBLite consensus disorder prediction 42 78 - -
Cca04g00075 290 SUPERFAMILY beta-beta-alpha zinc fingers 186 259 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00075 Cca-Chr4 677499 678524 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00075 9 290 C2H2 Transcription Factor Family AT3G60580 33.226 2.43e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g00075 zf-C2H2_6 2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00075 - - ccaj:109798515 393.275