Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00069 ATGGACGCCGTCGATTCAAcccctcccctccctcccctccctccctACGACCCATCTCAACAAGACCACGCGCCGCCAGAGTACCATCAGTCAGAAACCGCCCAAAACGGCACCAACTATGGAAAGCCTTCGGAGAACGGCGACAACAACAACAGCGGTTCGCATCCTTCGATTCCGAAGCCCCTGCTATCCGATAACGGCTTTTCGCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGCGGCTTCACGGGGAGCGGCACCGACAAGGACCAGTCTGGCGGCGAGGAGGAGACCACCAGCAAGCGCCGCCGCCGCAGCCGGTGGGACCCGCAGCCGGAGTCCAACGACCAGAGCGGCGGCGAATCGGGGACTGGGCCGAAGAAGAGGAAGTCTCGTTGGGCCGACGACGACCCCAAACCGGTGATTCAGCTTCCTGATTTCATGGGAGGTATCGAATTCGATCCCGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATCAGTCGAATGTTACAGTCTGGTTTGCCCTTAGACGATCGTCCTGAAGGTGCACGATCTCCTTCGCCTGAACCTATATATGATAACATGGGTATTAGAATTAACACTAGGGAATATCGTGCGCGTGAGAGGTTGCAGAAAGAGAGGCAAGAAATTATATCTCAGATTATAAAGAAGAACCCTGCGTTTAAGCCACCTGCGGATTATAGACCGCCCAAGCTTCAGAAGAAGCTTTATATTCCGATGAAGGAATACCCTGGTTACAATTTCATAGGGCTTATTATTGGTCCACGAGGTAACACCCAGAAGCGAATGGAGAAGGAAACCGGGGCTAAGATTGTGATCCGTGGTAAAGGTTCGGTGAAAGAGGGGAGGTTACAGCAGAAGAGGGATTTGAAGCCTGACCCTTCGGAGAATGAGGATTTGCATGTTTTGGTGGAGGCGGAGACGCCGGAGTCGCTTGAAGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTTTTAAATGAGCACAAGAGGCAACAGCTTAGGGAACTTGCTGCGTTGAATGGGACTATCAGGGATGAGGAGTATTGTAGGTTGTGTGGTGAGCCTGGTCATAGGCAATACGCGTGTCCTACCAGGACTTCAACTTTTAAGAGTGAAGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATTGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAATTTCTTAGCAGAGTTGGGAGGTTCGGTTCCTGAATCTGCGACGAAGCAAAGCAGTACGTTGGCGATTGGTGCAGGCACTTCCGGAAGCAATCCTCCTTGGGCTAACAATGCTGGTACTGCTGGTGGTGCGCCTCAAGCTGGCTTAGGGGCTGCTGCAGTTAAAAAGGAAATCGATGATACGAATTTGTACATCGGTTATTTGCCACCCACTCTTGATGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATCAAGGATCGGATGTCGGGTTTAAGTAAAGGATATGGTTTTGTGAAGTATGCCGATATAACAATGGCAAATAATGCAATCTTGGCCATGAATGGTTATCGCCTTGAGGGTCGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCCGGCCCACCAGCATCTGCTGTGCCCACTTATCCTGTTCCAAGTCAGCCACTTGGGGCATATCCATCCCAACAGTATGCTGCCGGTGGCCCACTTGGGAGTGCTCCTCCTGGGAGTTATGGTGGTACTCCGGTGCCATGGGGACCCCCTGTTCCTCCTCCATATGCTCCTTATGCTCCTCCTCCACCTGGGTCAACTATGTACCCTCCTATGCAAGGTCAACCTATGCCTCCTTATGGGGTTCAATATCCTCCCCCTGTGCAGACTGGCCCCCCTGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAAATGCATCCTAGTTATCCTCCCGGAGTGCAGTCCGACAATAGTACCTCAACTCAGTCTGTACCACCAGTCAATGTATATGTTCCTCCACCACCTCCCCCTCCTGCCCCCGTTCCTGTCTCAACATCAGACCAATCCCACAACATTGCAAATGTGCCTTGGGCCAGTAACCCTTTAGTGTTACCGCCTGCATCTTCTGTAGAGAAGACAACATATGGTGCAGATCAATCCCAGAGCATTGCTAATGTGCCTAGGGCTACTAATCCACCAGTGCCATCTCCTGCATCATCAGCCGAGAAGACTTCATATGCTGCTGATTCAGACTCCAAAAGGCCTGATGTTTCTTGGAGCTCTTGTGAACCTGATTTCTTAACCTCTTGCCATGTCTTTCTTGGAAGTTTGGGACTCACTTCTTTAACCTTGCTCTGCCTTTTAGATGCCTTTAGTCATCAAACATCTCATCATGAAGGCAATTATCAAGTTTCTCATTTGTTTCTGAAGTGA 2763 0.4488 MDAVDSTPPLPPLPPYDPSQQDHAPPEYHQSETAQNGTNYGKPSENGDNNNSGSHPSIPKPLLSDNGFSRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGFTGSGTDKDQSGGEEETTSKRRRRSRWDPQPESNDQSGGESGTGPKKRKSRWADDDPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQSSTLAIGAGTSGSNPPWANNAGTAGGAPQAGLGAAAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYAAGGPLGSAPPGSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPPVQTGPPGAPSQPATSSEMHPSYPPGVQSDNSTSTQSVPPVNVYVPPPPPPPAPVPVSTSDQSHNIANVPWASNPLVLPPASSVEKTTYGADQSQSIANVPRATNPPVPSPASSAEKTSYAADSDSKRPDVSWSSCEPDFLTSCHVFLGSLGLTSLTLLCLLDAFSHQTSHHEGNYQVSHLFLK 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00069 920 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 566 644 IPR000504 GO:0003723
Cca04g00069 920 Pfam KH domain 344 417 IPR004088 GO:0003723
Cca04g00069 920 SUPERFAMILY Retrovirus zinc finger-like domains 447 493 IPR036875 GO:0003676|GO:0008270
Cca04g00069 920 ProSiteProfiles Zinc finger CCHC-type profile. 477 491 IPR001878 GO:0003676|GO:0008270
Cca04g00069 920 MobiDBLite consensus disorder prediction 693 744 - -
Cca04g00069 920 Gene3D K Homology domain, type 1 321 449 IPR036612 GO:0003723
Cca04g00069 920 Gene3D - 541 648 IPR012677 -
Cca04g00069 920 ProSiteProfiles Type-1 KH domain profile. 344 416 - -
Cca04g00069 920 MobiDBLite consensus disorder prediction 527 542 - -
Cca04g00069 920 MobiDBLite consensus disorder prediction 527 547 - -
Cca04g00069 920 MobiDBLite consensus disorder prediction 7 21 - -
Cca04g00069 920 SMART c2hcfinal6 476 492 IPR001878 GO:0003676|GO:0008270
Cca04g00069 920 SMART c2hcfinal6 450 466 IPR001878 GO:0003676|GO:0008270
Cca04g00069 920 PANTHER RNA-BINDING PROTEIN RELATED 172 776 IPR045071 -
Cca04g00069 920 MobiDBLite consensus disorder prediction 822 856 - -
Cca04g00069 920 MobiDBLite consensus disorder prediction 212 228 - -
Cca04g00069 920 SMART kh_6 329 421 IPR004087 GO:0003676
Cca04g00069 920 SMART rrm1_1 567 640 IPR000504 GO:0003723
Cca04g00069 920 MobiDBLite consensus disorder prediction 1 80 - -
Cca04g00069 920 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 568 637 IPR000504 GO:0003723
Cca04g00069 920 SUPERFAMILY RNA-binding domain, RBD 562 654 IPR035979 GO:0003676
Cca04g00069 920 MobiDBLite consensus disorder prediction 179 200 - -
Cca04g00069 920 ProSiteProfiles Zinc finger CCHC-type profile. 451 465 IPR001878 GO:0003676|GO:0008270
Cca04g00069 920 Gene3D - 450 502 - -
Cca04g00069 920 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 329 455 IPR036612 GO:0003723
Cca04g00069 920 Gene3D - 243 320 - -
Cca04g00069 920 MobiDBLite consensus disorder prediction 745 776 - -
Cca04g00069 920 MobiDBLite consensus disorder prediction 670 868 - -
Cca04g00069 920 Pfam Splicing factor 1 helix-hairpin domain 218 325 IPR032570 -
Cca04g00069 920 MobiDBLite consensus disorder prediction 777 793 - -
Cca04g00069 920 MobiDBLite consensus disorder prediction 164 236 - -
Cca04g00069 920 MobiDBLite consensus disorder prediction 24 59 - -
Cca04g00069 920 CDD SF1_like-KH 330 446 - -
Cca04g00069 920 MobiDBLite consensus disorder prediction 265 284 - -
Cca04g00069 920 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 172 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00069 Cca-Chr4 615786 620477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00069 566 713 Eukaryotic Initiation Factors Gene Family AT3G16380 29.299 2.59e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00069 K13095 - gmx:100800982 1137.87