Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00063 ATGAAATCTCGGCTTTTGGTACTTGCGCTATGCGTTAAGCATAAGGAAGGCACGCGCCGTCACTTAGGGTCACGCGCTGCCACGTTGAGCGTTGGGGCGTGCATTGGACGCGTGAGGGCGAGAAGGGAGGCGAAACGCTATATATACCTGGATTGTTATTTACCTTGTTCTTTCTTCGCCTCCCACCGTTTTCATTATTTTTTCTTTCAGATTATTTCGACCAGAAACTGCATTCTCAAGATTCATGACCAATCTCGTTTCTTTCTTCCCGTGGTTGGAGCTCGTTTTTTAGGAGCTCTGCAGTTGATGGACTGTTACCCCAAGAGCAGTGACAAGAAAACATTAAAGAGTGCACCTGTTACAAAGTCTAGACTGGGTGTGCATTCCAGTTTGTTGCCTTACTCTCATACTGGGGCAACCTTTACACATGGAATGTTATTGACTATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTGTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCTCCCAGGAAGATAGCAAAGGATGTTAGCCATGGGTTTGCATCTTCCGATGCTGATACTGCTGGTTCTTATTTTAGCTGGCTGCTTAAATACCCATCAGCTCTTACATCTTTTGATCAAATCACAAACTATGCAAAAGGGAAAAGAATTGCGTTGTTTATGGATTATGATGGCACTCTTTCACCGATTGTAGATAATCCTGACTGCGCTTTCATGTCTGACAATATGCGCACCGCCGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTAGTATATCAATTTGTAGGACTAACTGAACTCTATTACGCTGGTAGTCATGGTATGGACATTATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGGGTACGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAGGTATTGAAGTCTCTTCAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTTCACTACCGGAATGTAGAAGAAAAGAGTTGGGATTTGGTGGGGCAACGTGTTCATGATGTTCTTAAAGACTATCCGCGTTTGCGCTTAACTCACGGGCGGAAGGTTTTAGAGGTCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACCTTTTTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAGAGGTTATGGGATCTTGGTGTCTTCAGCACCAAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCATCCGAGGTGATGGAATTTCTCAAGTCACTTGTGTTATGGAAGTCAAGCACATTAAAAAGCCTTATATAG 1482 0.4251 MKSRLLVLALCVKHKEGTRRHLGSRAATLSVGACIGRVRARREAKRYIYLDCYLPCSFFASHRFHYFFFQIISTRNCILKIHDQSRFFLPVVGARFLGALQLMDCYPKSSDKKTLKSAPVTKSRLGVHSSLLPYSHTGATFTHGMLLTIPRKKTGILEDVRCSGWLDAMKSSSPPPRKIAKDVSHGFASSDADTAGSYFSWLLKYPSALTSFDQITNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRTAVKKVAEYFPTAIISGRSRDKVVYQFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIRSTDKQGTEVNLFQPAAEFLPMINEVLKSLQECTKDIKGAKVENNKFCVSVHYRNVEEKSWDLVGQRVHDVLKDYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSSAPKESNAVYSLRDPSEVMEFLKSLVLWKSSTLKSLI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00063 493 TIGRFAM T6PP: trehalose-phosphatase 221 482 IPR003337 GO:0003824|GO:0005992
Cca04g00063 493 SUPERFAMILY HAD-like 225 484 IPR036412 -
Cca04g00063 493 CDD HAD_TPP 225 476 - -
Cca04g00063 493 Pfam Trehalose-phosphatase 227 472 IPR003337 GO:0003824|GO:0005992
Cca04g00063 493 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 116 488 IPR044651 GO:0004805|GO:0005992
Cca04g00063 493 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 116 488 - -
Cca04g00063 493 Gene3D - 315 491 IPR023214 -
Cca04g00063 493 Gene3D - 224 314 IPR023214 -
Cca04g00063 493 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 226 445 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00063 Cca-Chr4 575681 581181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00063 218 481 Trehalose Biosynthesis Gene Families AT1G70290 26.071 8.10e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00063 K01087 - gmx:100775207 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00063 04 575681 581181 Cca04g00063 04 575681 581181 ECH