Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00061 ATGGCTCGTggaaaggttcagctgaagcgaattgagaactcagtgcacagacaagttaccttctgcaagcgccgagcagggcttcttaagaaagctaaggaactctctgtgctgtgcgatgctgaaattggccttgtcattttctccgcccatggaaagctctatgaACTAGCCACCAAAGGAACCATGCAAGGGCTCATTGAGAGGTACATGAAGTTCACACCAGGGGCTCAGCCTGAAGCAGCACCTGAAGCACATCCTCTGGATGCAAAAGAGGAAACCAACAAGCTAAAACAAGAAATCCAAACACTGCAAAAGGGTATCAGGTATTTGTTTGGAGGAGGAAATAAGACGATGACAATCGATGAATTACAAATATTAGAAAAGAATCTCGAAATGTGGATATATCATATTCGTTCAATGAAGATGAACATCATGTTACAAGAAATTCAAGCTTTGAAAGATAAGGAGGGAACTCTTAAAGCGGCAAATAAATATCTGCAGGATAAGATTGTGGAGAATACTGTAGTTTATAATGTTGCTCCATATGCTACTGACACTCCATACCCGCTAATTATACAAGATGAGGTTTTTCGACTCTATTAA 606 0.2888 MARGKVQLKRIENSVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIERYMKFTPGAQPEAAPEAHPLDAKEETNKLKQEIQTLQKGIRYLFGGGNKTMTIDELQILEKNLEMWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLQDKIVENTVVYNVAPYATDTPYPLIIQDEVFRLY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00061 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca04g00061 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Cca04g00061 201 Pfam K-box region 90 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca04g00061 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca04g00061 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca04g00061 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 199 - -
Cca04g00061 201 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca04g00061 201 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Cca04g00061 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca04g00061 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca04g00061 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca04g00061 201 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Cca04g00061 201 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Cca04g00061 201 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00061 Cca-Chr4 557463 564180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00061 1 200 MADS-box Gene Family AT1G71692 60.190 7.57e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca04g00061 K-box 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00061 - - gmx:100783345 356.681