Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00060 ATGAATACTTTTACTCATGTCCCACCCGGTTTTAGGTTCCATCCCACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAGTTGCTTCAAGGAGGATTGACCTAGATGTCATAAAAGATGTTGACCTCTACAAAATTGAACCATGGGATCTTCAAGAGATTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTATTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGGCAATATATTCCAAGCATGACCTGATAGGTATGAGGAAAACCTTAGTCTTCTATAAAGGTCGAGCTCCAAATGGACAAAAGTCAGATTGGATAATGCACGAGTATAGGCTTGAAACAGATGAAAATGGCACACCACAGGCAAAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGGGTAACAACCATGCGTAAAGCGAGTGAACACGACTCTCCCTGTTGGTATGAAGATCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAACCTCTCAATCTAGTTTGGTATACCAGATACCATATCCTTGCAAGAAAGAGCTAGATTTTCCATACCAGTTACCTCGTGACCACTTTCTCCAGCTTCCACTTTTAGAGAGCCCAAAACTGCTTCAATCCTCTTCTACCATGAACCCTAATGCCGTGGCACCATATGTTATAGATCATGCAAACCACTCTACTATGCTTCCCTCATCACTCATTCAAGAAGAACAAGTTGGTCACCAAAACTTCCAGTATGGCAACAACAATTCCAATGAACAAGTAGCAGTGGATCAAGTGACTGATTGGCGAGTGCTTGACAAGTTCGTTGCTTCACAACTTAGTCATGATGCATCCAAAGACAATATTATCTTTCAAGGCACGGACAATGGCAACGTTGTACAGTTCAGACATTTGGACAAACAAGAAATTATAATGGTGCCTGAAGAAAATGCCCCAATATCAAACTCCACCTGTCCAATTGATTTGTGGAAATAG 1053 0.4122 MNTFTHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQAKGWVVCRVFKKRVTTMRKASEHDSPCWYEDQVSFMQDLDSPKQTSQSSLVYQIPYPCKKELDFPYQLPRDHFLQLPLLESPKLLQSSSTMNPNAVAPYVIDHANHSTMLPSSLIQEEQVGHQNFQYGNNNSNEQVAVDQVTDWRVLDKFVASQLSHDASKDNIIFQGTDNGNVVQFRHLDKQEIIMVPEENAPISNSTCPIDLWK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00060 350 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 329 - -
Cca04g00060 350 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Cca04g00060 350 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Cca04g00060 350 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Cca04g00060 350 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Cca04g00060 350 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00060 Cca-Chr4 544952 549121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00060 1 350 NAC Transcription Factor Family AT1G12260 55.923 9.96e-132 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca04g00060 NAM 3.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00060 - - gmx:100809525 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00060 04 544952 549121 Cca04g00060 04 544952 549121 ECH