Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00055 ATGACATGCAAAGGACAAACAGAATTTAATTTGAGTCCTATATATAGGTTACATTTCCTTCCCATTTTTCCTCACCCAAACAAATATAAACGAAATCTAGATAGAAAAAGAATGGAGGCCATTTCTTCAAAGGTTCTCATCACATCCCTTCTCATAATTCTTGCTTCTAGTTTGACCACACACTGTGAAAGAGCATACCAAGAAGCGAGCACAGCGTTCATCAGAACGTCTTGTAGTTCCACAACTTATCCAAGACTCTGCTACAGCTCCCTAGTGAAGCATGCAGACTTGATCCAAACAAATCGTGTGGTTTTAACAGGCACAGCCCTTAACGTGACTCTTGCATCTACGAAATCAACGTCAGCAATGATGTCAGCGCTGGCAAAGAGCCGAGGGCTGAAGCCAAGAGAGGTAGCAGCGATGAAGGACTGTGTGGAGGAATTGGGTGACTCAGTGGATGAACTCAGAAGGTCTATTGCTGAGATGAGTCATCTTGGACCCTCCGATTTTGAGATAACAATGAGTGATGTGCAAACATGGGTGAGTGCTGCTTTGACAGATGAAAGCACGTGCACTGATGGATTCCAAGAGAATGCCTCTGATGGTTCAGATATTAAGACAACCGTGAGAGGGAGAGTTGTTCAGGTTGCCCAATTGACTAGCAATGCATTGGCTTTGATTAATCAGCTTGCCAACTCACATGGTTAA 708 0.4364 MTCKGQTEFNLSPIYRLHFLPIFPHPNKYKRNLDRKRMEAISSKVLITSLLIILASSLTTHCERAYQEASTAFIRTSCSSTTYPRLCYSSLVKHADLIQTNRVVLTGTALNVTLASTKSTSAMMSALAKSRGLKPREVAAMKDCVEELGDSVDELRRSIAEMSHLGPSDFEITMSDVQTWVSAALTDESTCTDGFQENASDGSDIKTTVRGRVVQVAQLTSNALALINQLANSHG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00055 235 Pfam Plant invertase/pectin methylesterase inhibitor 73 226 IPR006501 GO:0004857
Cca04g00055 235 SMART PMEI_2 69 226 IPR006501 GO:0004857
Cca04g00055 235 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 232 IPR035513 -
Cca04g00055 235 TIGRFAM PME_inhib: pectinesterase inhibitor domain 45 230 IPR006501 GO:0004857
Cca04g00055 235 PANTHER 21 KDA PROTEIN-LIKE 46 230 - -
Cca04g00055 235 PANTHER PECTINESTERASE INHIBITOR-LIKE 46 230 - -
Cca04g00055 235 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 230 IPR035513 -
Cca04g00055 235 CDD PMEI-like_3 76 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00055 Cca-Chr4 503453 504799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00055 53 233 Carbohydrate Esterase AT3G14310 31.522 1.26e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00055 - - gmx:100305537 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00055 04 503453 504799 Cca04g00055 04 503453 504799 ECH