Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00054 ATGGCATTGCAAGCTCTGGTTAGAATCCTTCTATCACTTGTATTCATCTCAGCCTTTCTCCAATTAACATCATGTGCCTCCAAATCCAACCCCACCACCGATTCCACCAAAGTCTACAAAAAGTTCATAAAAGATCAATGCAATTCAACCACATACCCGAATGTTTGCTACAAGTCTCTCTCCCCTTATGCATCAACAATCAAAAGAAACCGAGTTACACTCACCAAAATGTCCATTCACGTGGCTCTAAAAGCAGCGAAAATTGCATCTAACACATTGAAAAAGGTGTCCAAAACGAAGGGGCTAACATATGGAGAAACCTCGGTGATTGCTGATTGCAGAGAGAACGTTGATGACACTGTGGATCTTCTTGGCCAATCTGCTGATGAGCTGGCACATTTGAATGGAACATCGATCGATCAGAAATATCAATGGGATAACATAAAGACATGGATGAGTGCTGCCATAACTGATGAGTCTACATGCACGGATGAGTTTGATGAAATACAAGTGCGTCCTTCGCTGCAGAAGACGATCAAAACCTCCGTTTATAACGTTTCTTGGTTGAATAGCAATGCCTTGGCATTCGTCAACAAGCTTTACTCCTAA 609 0.4204 MALQALVRILLSLVFISAFLQLTSCASKSNPTTDSTKVYKKFIKDQCNSTTYPNVCYKSLSPYASTIKRNRVTLTKMSIHVALKAAKIASNTLKKVSKTKGLTYGETSVIADCRENVDDTVDLLGQSADELAHLNGTSIDQKYQWDNIKTWMSAAITDESTCTDEFDEIQVRPSLQKTIKTSVYNVSWLNSNALAFVNKLYS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00054 202 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 3 201 - -
Cca04g00054 202 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 201 IPR035513 -
Cca04g00054 202 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 200 IPR006501 GO:0004857
Cca04g00054 202 Pfam Plant invertase/pectin methylesterase inhibitor 41 195 IPR006501 GO:0004857
Cca04g00054 202 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 201 IPR035513 -
Cca04g00054 202 SMART PMEI_2 38 196 IPR006501 GO:0004857
Cca04g00054 202 CDD PMEI-like_3 47 200 - -
Cca04g00054 202 PANTHER PECTINESTERASE INHIBITOR-LIKE 3 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00054 Cca-Chr4 495288 496233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00054 22 200 Carbohydrate Esterase AT3G14310 27.222 3.35e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00054 - - gmx:100527377 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00054 04 495288 496233 Cca04g00054 04 495288 496233 ECH