Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00053 ATGACAATGATGGGAAACACATTGTTAACGTTGTTATTGCTATCCTCAGTTTTCTCAATAGCCTCATCAAGAAGATCAAGACATTCCAACAGCAACATAGATTGGTGGTGCAACCAAACCCCACACCCCGAGCCATGCAAATACTACATGATGaaacaaagctactaccaccatcacaaactcaaacacaaaTCCGAATTCCGCAAAATTCTGATCCACTTGGCCTTGGAGAGAGTAGTGATCATGCGAAGGCAAGCACGTGAGTTAGGGCAAAACAGGATCACCAAGAAGCAGAAATCAGTGTTCCGTGATTGTTTGAAGCTCTATGACAACACCATCTTCCATCTAAACCGTACCCTTCAAGGCCTTCACGTTAAGAAGAGTTGTTCACCCTTCGATGCACAAACGTGGCTCAGCACAGCTAGCACAAACATCGACACATGTCAACACGGGGCCTTAGAGCTTGGCATTCGAGATTTCATCTTTCCAAGTGAGAGATTCAACGTGACGGAGATTATAAGCAATAGCTTATACGTGAATTGGGCTTTCCTGAAACACGAAAAGGTTCGTTACACAGCAGATGCAGATGATGGTGATGCTTTTCCAAGGTGGTTTTCATTGCATGAGAGGAGGCTTTTGTTGTCTTCTAAAATTAGGGCACATCTTGTTGTGGCCAAAGATGGTTCTGGACACTTCAGGAGTGTTCAAGCTGCTATCAATGCCGCGGCTAGGAGAAGGTTCAAGAGCAGGTTTATTATACATGTTAAGAAAGGAGTTTATAGAGAGAATATTGAGGTTGACAAGACCAACGACAATGTAATGTTGGTTGGTGATGGCATCAGGAATACCATAATAACAAGTGGCAGAAGCGTTCAAGATGGTTATACCACCTATAGCTCCGCAACAGCAGGAATTGATGGTGTTCATTTCATTGCACGTGACATTACCTTCAGAAACACTGCGGGTCCTCGCAGGGGTCAAGCTGTGGCACTTCGATCAGCCTCTGATCTCTCTGTGTTCTATCGGTGTTCCATCGAAGGGTACCAAGACACTCTCATGGTCCATGCACAACGACAATTCTACAGAGGATGTTACATCTATGGCACCGTTGACTTCATTTTCGGCAACGCCGCTGTTGTTTTTCAAAACTGTATCATTCTCGTAAGAAGGCCCTTAAATGGCCAAGCAAACATGATCACGGCCCAAGGCCGAGATGACCCATTTCAAAACACTGGGTTTTCGATTCACAACTCTCAGATCAGGGCCGCCCCGGACTTCAGGCCCGTTTCTGGCATGTTCAACACCTTCTTGGGCCGCCCTTGGCAGCGGTACTCGAGAGTTGTGGTCATGAAAACTTTCTTGGATAACTTAGTGAGCCCAATGGGCTGGTCTCCGTGGGGCAACACGAATTTTGCTTTGAACACTCTCTATTATGGAGAGTACAGAAACTTTGGGCCGGGGTCATCCACAAGGAACAGGGTTCGATGGCCCGGTTTTCATTCTATAACAAGCCCAAGTGAGGCATCAAGTTTCACCGTTGCGAACCTTCTTGCTGGGCGCACATGGTTGCCTGCTACTGGTGTGCCATTCACTTCTGGCCTTTAG 1605 0.4548 MTMMGNTLLTLLLLSSVFSIASSRRSRHSNSNIDWWCNQTPHPEPCKYYMMKQSYYHHHKLKHKSEFRKILIHLALERVVIMRRQARELGQNRITKKQKSVFRDCLKLYDNTIFHLNRTLQGLHVKKSCSPFDAQTWLSTASTNIDTCQHGALELGIRDFIFPSERFNVTEIISNSLYVNWAFLKHEKVRYTADADDGDAFPRWFSLHERRLLLSSKIRAHLVVAKDGSGHFRSVQAAINAAARRRFKSRFIIHVKKGVYRENIEVDKTNDNVMLVGDGIRNTIITSGRSVQDGYTTYSSATAGIDGVHFIARDITFRNTAGPRRGQAVALRSASDLSVFYRCSIEGYQDTLMVHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCIILVRRPLNGQANMITAQGRDDPFQNTGFSIHNSQIRAAPDFRPVSGMFNTFLGRPWQRYSRVVVMKTFLDNLVSPMGWSPWGNTNFALNTLYYGEYRNFGPGSSTRNRVRWPGFHSITSPSEASSFTVANLLAGRTWLPATGVPFTSGL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00053 534 PANTHER PECTINESTERASE 1 533 - -
Cca04g00053 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 180 IPR035513 -
Cca04g00053 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 179 IPR006501 GO:0004857
Cca04g00053 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 182 IPR035513 -
Cca04g00053 534 CDD PMEI-like_3 35 180 - -
Cca04g00053 534 Pfam Pectinesterase 222 519 IPR000070 GO:0030599|GO:0042545
Cca04g00053 534 SMART PMEI_2 28 179 IPR006501 GO:0004857
Cca04g00053 534 Pfam Plant invertase/pectin methylesterase inhibitor 32 177 IPR006501 GO:0004857
Cca04g00053 534 PANTHER PECTINESTERASE 1 533 - -
Cca04g00053 534 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Cca04g00053 534 SUPERFAMILY Pectin lyase-like 218 533 IPR011050 -
Cca04g00053 534 Gene3D - 215 534 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00053 Cca-Chr4 486991 489504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00053 32 534 Carbohydrate Esterase AT3G47400 60.117 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00053 K01051 - gmx:100807908 921.383