Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00050 ATGTCGTCCTCCCGTCCGCCACCGCATTCTCCGTCCAAAACCGACCAACGCGATCCCGCGCCGGGGACGCCGTCCTCTTTTTCCGGCAGATCTAAGCTCCAGAAGATTCCTCCCATTCCTATTCGTCGGAGTAAGTTAGCCGGCAATGAGGAGCCGGAGGAAGAGGAAGGTGAACGCGGCGATCCTAACATCTTGCTCGCGTCCTCGCTAGGGCTCAATCACATTCGCACGCGCTCCTCTTCTTCGCCTCTTCGCTATTCCTCCTCCCTCGGCGCTCCTTCATTCCTGACACAAGATGCTGTCACTGCGAACGACGTTAGACTTAGATCCAAATCTTCCAATCCAAGAAAAAGCCTAGGGGAAAAAGTTCATTTGAGCCAATCGAAATCGCTGAGAGCTCATTCGCAACTCATTCCCGTGCTAGAGggtcatcatgcagccttcgccaaagaaatgcaatccccacgttttcaggaaATCATGCGACTTACGAGTGGTCGCAGAAAGAGAAACCCTGATATTAAAAGTTTTTCCCATGAACTCAACTCCAAAGGAGTTAGACCATTTCCAATCTGGAAACATCGTGCCTTTGGCCACATGGAGGAAGTCATGGCAGCGATTAGAGCTAAGTTTGAAAAATTAAAGGAAGAAGTTGATTCTGACTTGGGTGGTTTCGCTGGAGATTTGGTGGGCATTCTTGAAAAAAATTTAGTGTGTGAGCGTGAATCGAGAGAGAAGTTGGAGGATTTGTTGGTTGTTGCTCAACGATGCGCAAAGATGTCTCCTACCAAGTTTTGGATCAAATGCGAATCTATTGTTCAAAATCTAGATGACAAACGTCAAGAACTGCCAGTGGGGATACTCAAGCAAGCTCATACACGCCTACTGTTTATTCTCACTCGTTGCACTCGCCTAGTGCAATTCCAGAAGGAAAGTGGATATGAACAAGATCACATTCTGAGTCTTCACCAACTCAGTGATCTTGGGGTCTATTCTGAGCAAATTTTGAAGGCTGCACAGCAGAAATCCAGTATTCCTCCACCTGGTGGACATGAGATGGCCGAGAAACAGTTAAAAATATCacaaggaaaagagaaagacaaactgataacaaaacaaagtcaaGCTGATCAACATGCAAGTGTTGTGATTGACAATGAGGAGGTTGCTACAAACAAAAGTGTTGAATCAACTCCTGTAAGCTATAGGATGTCTTCTTGGAGAAAACTTCCATCTGCTGCTTTGAAAAGGCAAAAAGATCAGGAAGCTGTAGATTTTCAGTCCAAAGATGAACTGGATCATGTGCTAGTCAAAGACGAAAATGCTGAAAATTTGGATTCTTTGTCATGTCATCCTGAACAGTCCCAATCATCATCAAGAACGCGGAAGGTTTCTTGGGGATTCTGGGGAGATCAGCAAAATCTAACATATGAGGATTCGATGATATGCAGGATTTGTGAGGTTGAAATACCCATTGTACATGTGGAGGAGCATTCTCGAATATGCACAATTGCTGATAGATGTGATTTGAAAGGCTTAACTGTAAATGAGCGGCTTGAACGAGTTTGTGAAACCATTGAAAGGATACTGGAATCCTGGACTCCAAAAAGCACACCAAAAAGCACTGATACTCATGGAGAAAGCTTCGATGTTGTCACAGCGGCAACATCAAGTGTGCATGAAGAGTTCAATGATTTATCTCTAGAGAGAAATAACCTGACTTGTAGATGCTCTGAAGACCTGCTTGATTCTACTGCAGAACCTGACAATACTTTTGTCATGGAGGACCTGAACCTTTCACCCAGAATATCATGTGATGCACGCATCTGCTTAAAACCTGATCAAGGAACTAAGGTATCTTCAGCTGGAAGCTTGACACCAAGATCACCATTGGTAACTCCACGAACCACTCAGATAGAAATGTTACTAAGTGGACGAAGAACATTATCTGAACTTGAGAGTTCTGAACAGATAAACAAGCTAGTTGAAATAGCTCGAGCTGTTGCAAATGTGAACAACTGTGACTACAGTGCTCTGGAGTATATGGTTGATCGCTTAGATGACCTGAAATATGCCATTCAAGACAGAAAAGTGGATGCACTTATTGTGGAGACTTTTGGACGACGAATAGAGAAACTTTTGCAGGAGAAATATATATCTCTTTGTGGGCAGATAGAAGATGAAAAGGTAGACTCATCAAATAGTATGGCTGATGAAGAGAGTTCGGTGGAAGATGAGGCAGTTCGTAGTCTTCGTGCTAGCCCTATTAATACTTGTTCCAAGGATCGAACCTCTATCGAGGACTTTGAAATAATAAAACCAATAAGTAGGGGTGCATTTGGACGAGTTTTTCTTACCCGAAAAAGAGCAACTGGTGATTTATTTGCTATAAAGGTTCTGAAAAAGGCAGACATGATACGTAAAAATGCAGTTCAAAGTATTttggcagagcgagacatccttatatctgttcgaaacccttttgtgGTCCGATTTTTCTACTCTTTCACATGTAGGGAAAATCTTTATCTAGTTATGGAGTACTTGAATGGTGGAGATCTTTATTCTCTGTTGAGAAATCTAGGTTGCTTAGATGAAGACATGGCTCGTGTATATATTGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATTCCTTAAATGTGATTCACAGAGACTTGAAGCCAGATAACTTACTGATTGGTCAAGACGGTCATATTAAGTTGACAGATTTTGGGCTCTCGAAGGTTGGTCTTATCAATAGCACAGATGATTTATCAGCGCCATCATTTTCTACTAACGAGCGTCAGAAACAATCTGTAGTTGGCACCCCGGATTATTTGGCACCTGAAATACTTCTTGGCATGGGACATGGTGCAACTGCAGATTGGTGGTCCGTGGGTGTCATACTTTATGAGCTTCTTGTGGGTATTCCACCATTTAATGCAGAACACCCACAGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCCAGGGTTCCTGAGGAGATCAGCTTTGAAGCATATGATTTGATGAACAAATTATTGAACGAAAATCCAGTCCAAAGATTAGGTGCAACAGGAGCTACAGAAGTTAAACGCCATGCTTTCTTCAAGGATGTTAATTGGGATACCCTAGCAAGGCAGAAGGCCATGTTCATTCCATCGGCTGAAGCTCTTGATACGAGTTATTTTATGAGCCGGTACATTTGGAATCCCGAGGATGAACATTGTGCTGGAGGTAGTGATTTTGATGACATTACTGAAACATGCAGCAGTGGTTCAGGCAGCGAATTTTTAGATGAAGATGGTGATGAATGCGGTAGTTTAGCAGAGTTCAATGGTCCACCTCTTGAAGTGCAGTACTCATTTAGTAATTTCTCATTTAAGAACTTGTCTCAGCTAGCATCTATCAATTATGATCTGGTGATTAAGAACTCCAGGGAATCAACTCAATGA 3465 0.4092 MSSSRPPPHSPSKTDQRDPAPGTPSSFSGRSKLQKIPPIPIRRSKLAGNEEPEEEEGERGDPNILLASSLGLNHIRTRSSSSPLRYSSSLGAPSFLTQDAVTANDVRLRSKSSNPRKSLGEKVHLSQSKSLRAHSQLIPVLEGHHAAFAKEMQSPRFQEIMRLTSGRRKRNPDIKSFSHELNSKGVRPFPIWKHRAFGHMEEVMAAIRAKFEKLKEEVDSDLGGFAGDLVGILEKNLVCERESREKLEDLLVVAQRCAKMSPTKFWIKCESIVQNLDDKRQELPVGILKQAHTRLLFILTRCTRLVQFQKESGYEQDHILSLHQLSDLGVYSEQILKAAQQKSSIPPPGGHEMAEKQLKISQGKEKDKLITKQSQADQHASVVIDNEEVATNKSVESTPVSYRMSSWRKLPSAALKRQKDQEAVDFQSKDELDHVLVKDENAENLDSLSCHPEQSQSSSRTRKVSWGFWGDQQNLTYEDSMICRICEVEIPIVHVEEHSRICTIADRCDLKGLTVNERLERVCETIERILESWTPKSTPKSTDTHGESFDVVTAATSSVHEEFNDLSLERNNLTCRCSEDLLDSTAEPDNTFVMEDLNLSPRISCDARICLKPDQGTKVSSAGSLTPRSPLVTPRTTQIEMLLSGRRTLSELESSEQINKLVEIARAVANVNNCDYSALEYMVDRLDDLKYAIQDRKVDALIVETFGRRIEKLLQEKYISLCGQIEDEKVDSSNSMADEESSVEDEAVRSLRASPINTCSKDRTSIEDFEIIKPISRGAFGRVFLTRKRATGDLFAIKVLKKADMIRKNAVQSILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEDMARVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSFSTNERQKQSVVGTPDYLAPEILLGMGHGATADWWSVGVILYELLVGIPPFNAEHPQQIFDNIINRDIQWPRVPEEISFEAYDLMNKLLNENPVQRLGATGATEVKRHAFFKDVNWDTLARQKAMFIPSAEALDTSYFMSRYIWNPEDEHCAGGSDFDDITETCSSGSGSEFLDEDGDECGSLAEFNGPPLEVQYSFSNFSFKNLSQLASINYDLVIKNSRESTQ 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00050 1154 Gene3D Phosphorylase Kinase; domain 1 767 1067 - -
Cca04g00050 1154 MobiDBLite consensus disorder prediction 1 32 - -
Cca04g00050 1154 ProSiteProfiles AGC-kinase C-terminal domain profile. 1041 1141 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca04g00050 1154 CDD STKc_MAST_like 775 1045 - -
Cca04g00050 1154 Pfam Protein kinase domain 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00050 1154 Gene3D Transferase(Phosphotransferase) domain 1 853 1058 - -
Cca04g00050 1154 MobiDBLite consensus disorder prediction 106 126 - -
Cca04g00050 1154 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 28 1153 - -
Cca04g00050 1154 SMART serkin_6 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00050 1154 ProSiteProfiles Protein kinase domain profile. 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00050 1154 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 1153 - -
Cca04g00050 1154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 888 900 IPR008271 GO:0004672|GO:0006468
Cca04g00050 1154 SUPERFAMILY Protein kinase-like (PK-like) 753 1061 IPR011009 -
Cca04g00050 1154 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00050 Cca-Chr4 462455 473584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00050 11 1154 AGC Kinase Gene Family AT5G62310 62.919 0.0 1430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Cca04g00050 Pkinase 1.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00050 - - gmx:100817975 2006.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00050 04 462455 473584 Cca04g00050 04 462455 473584 ECH