Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00040 ATGGTGGTCAACGAGAGACCCTCCAAGAGGATGAAGAGGAGGGTCACAGCCGATCTCTACGATTTTCTCACTTTTCCGGCAGCCGCGGACGCTTCCTCCTGCGAGCCCTTCCGGAACTGCGTTCAGCGTTTCCTCTCTGACAACGCACGCATCACTTTCCCCCCCTCACTATTTCCGTCTCTTATGACATGGCAGATCTTGTTCCGTGTTGGAGACCTGGTCGAAGGACCTGATCTATCGCCTGCCATGGTTACTCTCGATATTGTTGAAGAAGATGTTACACGTTCACGTACTTCGGTCTACTGTGACCAGTGCCGAGTCGTTGGTTGGAGTGGACATCCGGTGTGTAGAAAGCGATACCATTTCATAATAAGGGCAGCAAGTAACGCCGTTGAAGCATATCAAAGACCTTGTTCACGATGTGGAAATCTTGTCCAATTATCTGAAACAAGGTGTAGATCCTGTACCTTTGCCATCACCGTTGATGACCTTGAGGACTGGGTGTATCTTCAGATTGAAGATAACACGCATCTTCTGCACGGTGTTGTCCATTCCAATGGTTATGGTCACCTGCTTACTCTTAATGGACGCGAAGGCGGCTCCAAGCTTCTCTCCGGATCTGATATCATGGATTTCTGGGATAGGCTGTGTGCTGCAATTTCTGTTAGGAAGGTTAGCGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGATTGCTTCATGCAGTTACAAACGGACATTCCTGGTATGGCAATTGGGGTTATGAATTTGGATCTGGCAGCTATGCACTTACCCAAGATGCGTACAAGAATGCAGTGAATACCCTGTCAAGCATGCCCTTGTCCTCCTTTTCATTCCATGGTCGGGGACCACGAACCCGCCTGGAGTGTGTCATTTCCCTTTACCATTCTTTGGCAGAAACTGAACTTGTAACGATTAAAGATCTCTTTTCCTTTTTGCTGACGTTGATTCATGAATGTCGTAAGCCCACATCCACGAGGACATCTTGCACCAGTAATTTGTTGTGTGCTTGGACGGGAAATGATGTTGAAGAGGTGCAACATGCTCTGATCAAGGTATTGCTTGCGTCGGGTGCCTATACTGAGGCCAAATGGGTGACACGGCGTGCTCTCAAGGGTGCAGTAAGCCGGGGTGTTTCATCTCCAGAGCTTCTGGACTATTGTTTTAAGCACTTGCCGGGGAAATTAGCTGCCAATGGAATGGTAGTCTGTTCACGATGCAATCCCATTTCCAGTGCCATTGAATTCAGTTTGGAACCCCCCAGAAATGGATTAAGAGCAAATTTAAGCTATCCGACAGAAGAACAAATGACCTCTGATTTGACGTTCTTATTTGATTCAATTATTCACCCTGAAAAAATGGTGTACTACAGACCAAAGATTATGAGGAAAAGGGTGGCTGATTCGGCCAGGAAGCTCCTTGACTGCAAGCAGTTTATGAAGGATTACAAGCCATATGAAATGGCCGTTGAACTGCCTTCAGTCATTAGGCTGTGGTGTCATGTGGAACTTTCTGATCAGCCTAAGGATGATCCATCCCCACCACCGGAGCTAATTGTATTGCCTTTGAACGCTACCGTTGGTGACCTCAAGAGTGAGGCGACTAGTGCTTTTCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAGGACCTCCTAGGATATGGGGCTATCAATGATTCGCTCACCGTAAAGTTCTTGCTCGGTACAAGTGGATCAATCCAAATTCAAGGTAAATGCCCTGCAAAACATGGGCTAAGTCGATTCCGAATGGAACGGGGAACTGAGGTGTGGAAGGTTGATTGCACATGTGGGGCCAAGGATGACGATGGAGAGAAAATGTTGGCATGCGATACCTGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATCCAGATGGCATGCCTTCTAAGTTTGTGTGTATGAGATGTGTCAACTTGTTCCGTGAGGAGACTAAAAAGTTACCAGTATCTGGTGAGGAAACAAAAGAAACCTGTATATTGAACACATATTGCAGAGACGAGGCAGTAACAAAGGACTGTGCAACAGTATCATGTAACATAGCTGTGAATTTTGGTGTACGTTGA 2121 0.4668 MVVNERPSKRMKRRVTADLYDFLTFPAAADASSCEPFRNCVQRFLSDNARITFPPSLFPSLMTWQILFRVGDLVEGPDLSPAMVTLDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAVEAYQRPCSRCGNLVQLSETRCRSCTFAITVDDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGSDIMDFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAVTNGHSWYGNWGYEFGSGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGPRTRLECVISLYHSLAETELVTIKDLFSFLLTLIHECRKPTSTRTSCTSNLLCAWTGNDVEEVQHALIKVLLASGAYTEAKWVTRRALKGAVSRGVSSPELLDYCFKHLPGKLAANGMVVCSRCNPISSAIEFSLEPPRNGLRANLSYPTEEQMTSDLTFLFDSIIHPEKMVYYRPKIMRKRVADSARKLLDCKQFMKDYKPYEMAVELPSVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVGDLKSEATSAFQEVYAMYKRFQAEDLLGYGAINDSLTVKFLLGTSGSIQIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNPDGMPSKFVCMRCVNLFREETKKLPVSGEETKETCILNTYCRDEAVTKDCATVSCNIAVNFGVR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00040 706 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 679 - -
Cca04g00040 706 SUPERFAMILY FYVE/PHD zinc finger 600 657 IPR011011 -
Cca04g00040 706 CDD PHD_MMD1_like 610 655 - -
Cca04g00040 706 Pfam PHD-finger 611 657 IPR019787 -
Cca04g00040 706 SMART PHD_3 610 656 IPR001965 -
Cca04g00040 706 ProSitePatterns Zinc finger PHD-type signature. 611 655 IPR019786 -
Cca04g00040 706 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 679 - -
Cca04g00040 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 659 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00040 Cca-Chr4 403873 407113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00040 80 655 PHD Transcription Factor Family AT5G22260 28.827 1.76e-86 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca04g00040 PHD 3.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00040 - - gmx:100780558 1284.24