Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00038 ATGGGTTCGTCTAATGGTGGTGTTCCGCCGGGATTTAGGTTTCATCCAACGGACGAAGAGCTGCTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGACATGGATGTTATTAGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGATTTGCAAGAAAGATGTAGAATTGGATCAACTCCACAAAATGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACAGGTTCAAGGACTAATAGAGCAACAAATGCAGGGTTTTGGAAAGCAACGGGAAGAGATAAATGCATTAGGAATAGCTATAAGAAGATTGGAATGAGAAAAACCCTTGTCTTTTACAAAGGCAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTATCGCCTAGAAGAAGGCAATGATCCTCAGGGAAATGCCAATGAAGATGGCTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATCTATTCAAGATTGGAAATGAAGGTGGGGGCTCAACACATAATCCAGATCAACAAATGAACAATTCCTCAAGCACCAATGCACGGTCCTTCATGCATAGAGAAAACCATTACCTACTACATCAACAGCAAAACCCTAGGAACTCGTCAGGGCTTGAGCTTGATAAGCCTGAACTTGCTCTCCACTACCCACACTTGCATCATCAAAACCCTCAATACTCACTCTTCCAATCCCAACCTCTTCTTCAGGCTCAAAAACCTATGGTTTATGATTATTCATACGCATCATCTCTACCTTCGGACACCCCCATCATGGCAAAGCAACTCATGACAAACCCTAGAGACTGTGAGAGCGGTAGCGAGGGCCTAAGGTATCAAGTTTCGGAGTCTGGAATGGAAGTTGGGTCGTGTGAACCGAATCAAGAAATAGGTGGCGGAAGAGGAGAAGGAATAAACGAATGGGGTGTTCTTGATAGGTTGGTGACCTCTCAACTTGGAAATGAAGAGTCAAACAAAGGGGTGAGGTTTGAGGAGGCAAATCCACACCAGATCAACCAACTTTCATTACGGGGAGGGATGGATTTCTGGGCCTATGGGAAACAATGA 1086 0.4429 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEEGNDPQGNANEDGWVVCRVFKKKNLFKIGNEGGGSTHNPDQQMNNSSSTNARSFMHRENHYLLHQQQNPRNSSGLELDKPELALHYPHLHHQNPQYSLFQSQPLLQAQKPMVYDYSYASSLPSDTPIMAKQLMTNPRDCESGSEGLRYQVSESGMEVGSCEPNQEIGGGRGEGINEWGVLDRLVTSQLGNEESNKGVRFEEANPHQINQLSLRGGMDFWAYGKQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00038 361 MobiDBLite consensus disorder prediction 171 185 - -
Cca04g00038 361 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Cca04g00038 361 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Cca04g00038 361 PANTHER PROTEIN BEARSKIN2-LIKE 5 257 IPR033519 -
Cca04g00038 361 MobiDBLite consensus disorder prediction 166 185 - -
Cca04g00038 361 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 257 - -
Cca04g00038 361 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Cca04g00038 361 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00038 Cca-Chr4 392005 395064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00038 1 355 NAC Transcription Factor Family AT1G33280 53.444 8.53e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca04g00038 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00038 - - gmx:100804181 683.33