Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00036 ATGAGAAGTATAGGACAGTGTCAGTGCCCTGAATCCTGCAAGTTTCAGGTACAAGATGGGAAGGACAATACGAGAAGGCAAAGAGGGGTCAAGGAAGCGGGCGCGTGGGGACGGTACGTTTCGGAAATAAGGTTGCCGGGCCAGAAAGGGCGCATATGGCTGGGCTCATTCGGGTCGGCTGAGATGGCGGCTCGGGCTTACGACTCGGCGGCTTTCTTCCTCAAAGGAGCCTCTGCCATCCTTAATTTCCCCGACCTCGTCGACTCCCTCCCTCGCCCTCTCTCCTCCTCCCGGAGAGACATACAATCCGCCGCTGCCATGGCCGCCCTCCACCACCCCACCGGAGACGACTCCACCACGACGTCGTTTCAGGATGTCTTGGAAGCTCCTCTTATGAGCCCCCCCTCCGCTTTGATTCCACTTTCGGAGACTTTTCATGGAACCAAGTCTTTGATCACATTCTCATCATGGAATCAACAATAA 483 0.559 MRSIGQCQCPESCKFQVQDGKDNTRRQRGVKEAGAWGRYVSEIRLPGQKGRIWLGSFGSAEMAARAYDSAAFFLKGASAILNFPDLVDSLPRPLSSSRRDIQSAAAMAALHHPTGDDSTTTSFQDVLEAPLMSPPSALIPLSETFHGTKSLITFSSWNQQ 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00036 160 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Cca04g00036 160 SUPERFAMILY DNA-binding domain 28 85 IPR016177 GO:0003677
Cca04g00036 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF036-LIKE 25 124 - -
Cca04g00036 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 124 - -
Cca04g00036 160 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Cca04g00036 160 Pfam AP2 domain 28 76 IPR001471 GO:0003700|GO:0006355
Cca04g00036 160 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Cca04g00036 160 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00036 Cca-Chr4 379213 380771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00036 3 113 AP2-EREBP Transcription Factor Family AT5G11590 49.558 6.53e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca04g00036 AP2 4.6e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00036 K09286 - ccaj:109799237 184.496