Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00033 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAACAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAGGCCACTGGAAGATCTAAGGGCTATGGATTTGTTACTTTTCGCGAACCAGAAGCTGCCATGAGAGCTTGCGTGGATGCTGCTCCTGTAATCGATGGTAGGAGAGCCAACTGCAACCTTGCTTCTTTGGGTGTTCAGAGATCTAAGCCTTCAACCCCAAAGCATGgaggaggaggagggaggaACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGGAGTGGGATCGGCTTTTCCATCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGCGTGTATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGTGGACCAGGAGGGATGATGACGGGTGCGGCGGCGTTCTACCCATATCTGCAGTACGGTGAAGGGAGTGGTGGCGGCACCACCGGCGGCTATACTTCAGGCCAGGGTTATGGTGTCAACTATCCCCCTCAGCTCTTTCAGTATTCTCCCATTGCTTCCACTGCAGCAGGTGGCTATGCCCAACACTATGGAACACCTATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGTGTGTTTTGCTGTGCCGCAGGCGTGA 801 0.4931 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGEGSGGGTTGGYTSGQGYGVNYPPQLFQYSPIASTAAGGYAQHYGTPMSLAPSPALQSVCFAVPQA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00033 266 PANTHER BOULE-RELATED 1 261 IPR037366 GO:0003729
Cca04g00033 266 SUPERFAMILY RNA-binding domain, RBD 12 116 IPR035979 GO:0003676
Cca04g00033 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Cca04g00033 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Cca04g00033 266 SMART rrm1_1 17 89 IPR000504 GO:0003723
Cca04g00033 266 CDD RRM_RBM24_RBM38_like 16 91 - -
Cca04g00033 266 Gene3D - 7 113 IPR012677 -
Cca04g00033 266 PANTHER OS01G0876800 PROTEIN 1 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00033 Cca-Chr4 361137 366819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00033 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 6.59e-14 69.3