Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00030 ATGGCCAAGAGTCCCTGTCCTTTTCACTTTTTCCAGTTCTTGGCTACGCTGTTACTCACTTCCTATTCTATTTTCCCGCCTTGTGTGTCTCTGACGTTGGAAACCCAAGCTCTTCTACAGTTTAAGAACCATTTGAAGGACTCCTTCAATTCTTTGGTTTCATGGAATGAATCAGACTCTCCATGTCAGTTCTATGGAATTGCATGTGATCCAGTTTCTGGGAGAGTTACAGAAATTTCACTGGAGAATAAATCCCTCTCCGGTGACATTTTCCCATCACTTTCAGTTCTTCAGAGCCTCCAAGTTCTATCACTCCCATCCAATCTAATTTCTGGAAAGCTCCCATCAGAAATAAGCATGTGGACCAACCTCAGAGTGTTGAATCTGACAGGAAATCAATTGGTTGGAGCAATCCCAGACTTGTCAGGGCTGAGAAACCTGAAGGTTCTTGACCTTTCAGCAAACTACTTTTCTGGCAGCATCCCAGGCTGGGTGGGGAATCTAACTGGACTGGTTTCACTGGGTCTTGGGGTAAATGATTATAATGAGGGTGAGATTCCACAGACTCTTGGAAATCTGAAGAACTTGACCTGGCTCTATCTTGGTGGCTCCCATTTGATAGGAGAGATTCCAGAATCAATATATGAAATGAAGGCATTGGAGACACTGGATATCTCAAGAAACAAGATCTCTGGCAGACTCTCCAGATCAATTTCCAAGTTAGAGAATCTTTACAAGATTGAGCTCTTCTCAAATAATTTGACAGGAGAGGTTCCAGTTGAGCTTGCAAACCTCACCAATCTGCGGGAGATTGATCTTTCTGCAAACAACATGTATGGTAGGTTGCCAGAGGAAATTGGTAATATGAAGAATTTGGTTGTTTTTCAACTATATGAAAACAACTTTTCTGGGGAACTTCCTGCTGGATTTGCAGATATGCGTCATCTCATTGGGTTCTCAATTTATAGAAACAGCTTCACTGGGACGATACCAGAAAATTTTGGTCGGTTTTCACCACTTGAAAGTATTGACATATCTGAGAATCAATTCTCAGGTGATTTCCCAAAGTTCTTGTGTGAAACCAGGAAGTTGAGATTTTTGCTTGCATTGCAGAACAATTTTTCAGGGACTTTTCCGGAGTCTTATGTCACATGCAAATCGCTGGAGAGGTTTAGGATCAGTATGAACCGCTTATCTGGGAAAATTCCAGATGAGGTTTGGGCACTTCCATATGTAAAAATAATTGATTTGGCCTATAATGATTTCACTGGCATGGTACCTTCAGAAATTGGGTTGTCTACTAGCTTAAGTCAGATAGTTTTGATACAGAACAGGTTTTCAGGTAAGCTCCCATCAGAGCTTGGCAAGCTGGTGAACTTGGAGAAGCTTTACTTGAGCAACAACAATTTCTCTGGAGAAATACCACCTGAAATAGGATCACTGAAGCAGTTATCCTCTTTGCATCTAGAAGAGAATTTGTTAACCGGATTGATACCTGCAGAACTGGGTCATTGTACAAGGCTTGTGGACTTGAATCTTGCTTGGAATTCTCTATCTGGAAATATCCCCCAGTCAGTTTCACTAATGAGCTCATTGAACTCTCTTAACATATCTGGAAACAAACTTACAGGTTCTATTCCAGATAATTTAGAGGCAATAAAGCTAAGCTCAGTGGATTTTTCTGAAAACCTGCTTTCTGGAAGAATTCCATCTGGTCTTTTTATTGTTGGAGGAGAGAAAGCTTTTCTGGGAAACAAGGGGTTGTGTGTTGAGGAAAACCTAAAACCTTCCATGAATTTTGATCTGAAGATTTGTGCCAAAAATCATAGTCAGACAAGGGTCTCTGCTGATAAAtttgtcttgctcttttttgttccttctgtttttgttgttgttttAGCTGGGTTGCTGCTTTTGAGTTGTAGAAACCTCAAGCATGGTAAGGATAAAAACTTGCAAGGTCAAAAGGAAGTAAGTCAAAAATGGAAACTTGCATCTTTCCACCAAGTAGATATTGATGCCGATGAAATATGTAATCTGAAAGAAGATAATTTGATAGGTAGTGGTGGTACAGGAAAGGTTTATCGAGTGGAGTTGAGGAAGATTGGAGCCATGGTGGCTGTCAAGCAACTAGGGAAGGTAGATGGTGTGAAAATTTTAGCTGCAGAGATGGAGATTTTGGGGAAAATTAGGCATAAAAATATACTCAAACTCTATGCTTGTTTACTTAAAGGAGGATCCAACCTTTTAGTGTTTGAGTACATGCCAAATGGCAATCTTTTTCAAGCGCTTCACAGACAGATAAAAGATGGGAAGCCAGACttggattggaaccagaggtataaaattgctctgggagctgccaaaggaattgcttatttacaccacgactgtaatccacctattattcacagggatattaaatccagcaacattttgcttgatgaggattatgagccaaaaattgctgattttggtattgcaaggtttgcagaaaaaTCTGATAAGCAGTTGGGTTATAGCTGTCTAGCCGGCACACTTGGTTACATTGCTCCAGAACTTGCTTATGCCACTGACATCACTGAAAAGAGTGATGTTTATAGCTTTGGAGTGGTGCTACTAGAATTAGTGTCTGGCAGAGAACCCATTGAAGAGGATTATGGAGAGGCGAAGGATATTGTTTATTGGGTTTTGACTCATCTCAATGACCGTGAAAGCATTCTCAACATTCTTGATGGAAGAGTGGCATCTGATTCTTTTGAAGATATGATGAAAGTGTTGAAGATTGCTATTAAGTGCACCACTAAGCTTCCAACCTTGCGCCCCACCATGAGAGAGGTTGTCAAGATGCTAATTGATGCCGAACCTTGCACATTGAAATCTCCACTATGCCGACTTGAAAAAGACACAAAGACCCTTTTGTAG 2925 0.3788 MAKSPCPFHFFQFLATLLLTSYSIFPPCVSLTLETQALLQFKNHLKDSFNSLVSWNESDSPCQFYGIACDPVSGRVTEISLENKSLSGDIFPSLSVLQSLQVLSLPSNLISGKLPSEISMWTNLRVLNLTGNQLVGAIPDLSGLRNLKVLDLSANYFSGSIPGWVGNLTGLVSLGLGVNDYNEGEIPQTLGNLKNLTWLYLGGSHLIGEIPESIYEMKALETLDISRNKISGRLSRSISKLENLYKIELFSNNLTGEVPVELANLTNLREIDLSANNMYGRLPEEIGNMKNLVVFQLYENNFSGELPAGFADMRHLIGFSIYRNSFTGTIPENFGRFSPLESIDISENQFSGDFPKFLCETRKLRFLLALQNNFSGTFPESYVTCKSLERFRISMNRLSGKIPDEVWALPYVKIIDLAYNDFTGMVPSEIGLSTSLSQIVLIQNRFSGKLPSELGKLVNLEKLYLSNNNFSGEIPPEIGSLKQLSSLHLEENLLTGLIPAELGHCTRLVDLNLAWNSLSGNIPQSVSLMSSLNSLNISGNKLTGSIPDNLEAIKLSSVDFSENLLSGRIPSGLFIVGGEKAFLGNKGLCVEENLKPSMNFDLKICAKNHSQTRVSADKFVLLFFVPSVFVVVLAGLLLLSCRNLKHGKDKNLQGQKEVSQKWKLASFHQVDIDADEICNLKEDNLIGSGGTGKVYRVELRKIGAMVAVKQLGKVDGVKILAAEMEILGKIRHKNILKLYACLLKGGSNLLVFEYMPNGNLFQALHRQIKDGKPDLDWNQRYKIALGAAKGIAYLHHDCNPPIIHRDIKSSNILLDEDYEPKIADFGIARFAEKSDKQLGYSCLAGTLGYIAPELAYATDITEKSDVYSFGVVLLELVSGREPIEEDYGEAKDIVYWVLTHLNDRESILNILDGRVASDSFEDMMKVLKIAIKCTTKLPTLRPTMREVVKMLIDAEPCTLKSPLCRLEKDTKTLL 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00030 974 Gene3D Phosphorylase Kinase; domain 1 644 754 - -
Cca04g00030 974 Gene3D Ribonuclease Inhibitor 317 598 IPR032675 -
Cca04g00030 974 Pfam Leucine Rich repeats (2 copies) 122 162 IPR025875 -
Cca04g00030 974 SUPERFAMILY Protein kinase-like (PK-like) 676 951 IPR011009 -
Cca04g00030 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cca04g00030 974 CDD STKc_IRAK 686 951 - -
Cca04g00030 974 Pfam Protein kinase domain 682 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00030 974 Pfam Leucine rich repeat 219 277 IPR001611 GO:0005515
Cca04g00030 974 Pfam Leucine rich repeat 459 518 IPR001611 GO:0005515
Cca04g00030 974 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 12 964 - -
Cca04g00030 974 SUPERFAMILY L domain-like 58 377 - -
Cca04g00030 974 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Cca04g00030 974 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Cca04g00030 974 Gene3D Ribonuclease Inhibitor 31 181 IPR032675 -
Cca04g00030 974 ProSiteProfiles Leucine-rich repeat profile. 459 481 IPR001611 GO:0005515
Cca04g00030 974 SUPERFAMILY RNI-like 271 572 - -
Cca04g00030 974 SMART LRR_typ_2 144 168 IPR003591 -
Cca04g00030 974 SMART LRR_typ_2 457 480 IPR003591 -
Cca04g00030 974 SMART LRR_typ_2 97 121 IPR003591 -
Cca04g00030 974 SMART LRR_typ_2 217 241 IPR003591 -
Cca04g00030 974 SMART LRR_typ_2 265 289 IPR003591 -
Cca04g00030 974 SMART LRR_typ_2 481 504 IPR003591 -
Cca04g00030 974 SMART LRR_typ_2 529 553 IPR003591 -
Cca04g00030 974 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Cca04g00030 974 Gene3D Ribonuclease Inhibitor 240 316 IPR032675 -
Cca04g00030 974 SMART serkin_6 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00030 974 Gene3D Ribonuclease Inhibitor 182 239 IPR032675 -
Cca04g00030 974 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 964 - -
Cca04g00030 974 ProSiteProfiles Protein kinase domain profile. 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00030 974 Gene3D Transferase(Phosphotransferase) domain 1 755 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00030 Cca-Chr4 311600 316269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00030 15 961 Receptor kinase-like Gene Family AT1G72180 57.785 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca04g00030 Pkinase 6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00030 - - gmx:100789704 1690.24