Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00029 ATGGCACCCTTTCCCCTTAACCTCCTTATTCTCCTCTTTTCTCTTCCATCCATTTACACACTCTCTACCGTTTCCATTTCTCAAACTTCCAATTCCACCCAAACACTTATTTGTGTCCTGCAACACCCAAACCAACAAGCACAATCAAATCTCAACTGCACCACCTTTCCTCAGACTCAGCCTATTACGCTTCAACTCAATCATAATGTTTCCTACTCTCAGATTGTGGGGGGCGACGGCTATGTATGTGCTTTAGGGCCATCATCTTCTTCCACCTCCATCATGGGCTGTTGGAGATTCTCTTCCAATGCTACCAATGTTCCCTATAAGCGAATCTACCATGGACCCCTTGTTCAACAAATTGACGGTGGCAATTCACACGTTTGTGGCCTTGTTAACAATAgtcttagtcttggtcttggccttgagtgttggCAATGGCATGGCTTCAATTCAAGCACTGCCAGGGACATGTCAATGACCATGGCAAGCGTTGCCGTGGGAGAGGATTTTGTATGTGTGTTATCACAGAGAGGGGAAGTTAATTGCACAGGCACGAGTAGTAGTAGTGTTATTGTTGATGTGCCTGCGCATGGTGGGAATTACACTTTTGTAGCAGCAGGGTTTAGGCATGCCTGCGCCATCTCTTTTGATGGTAGCTTGCATTGTTGGGGAGACATGGAGGGTGAAATACCACAAGGGAGATTCTTTTCTTTGGCGTTGGGAGAGAACCGAAGCTGTGCCCTTGGGTATGACAGAATAGTTCTATGTTGGGGGTCCAATAATTTCATCATGCCACCCAGATTGCAAGACACTTTCTTTGAATCAATTGTGGCAAAGAGAAGTGTTTTCTGTGGTGTTGTGTCTTCTAACAATTCCTTGCTTTGTTGGGGTTCCGAATTTTTTGAGTCAAACGCGAAGGTGTTTGACGATGTCCTTCCAGGGCCTTGTAGGAGCCAGTGTCCGTGTGGGCCCTTGCTAAATTCAGCCAAACTATGTCCCTCTCCTGACATCATTTGCCAACCCTGTTCCCCCCAAGTGGCTCAATCTCCACCACAACCACCAAATAATAACACAGGTTGGAGCAGAAAAATGGTGGCATTTCTGGTGGTTGGATGTGTTGGTTGCAGTTCCCTATTGCTAGTCATGGCTTTCTTCCTTTACAGATACTGCAACTCCAACCGCAGAGCAAGCCGTGTCCATGATTCTGACAGGTTGGATGGGTCTCAACCTGTATCTCGTGTTCTTCAGAAGCGTTTGAGCCATGTGATCAGCATGGGAAATGGAAGCCCTTTGGAGGAGTTTTCTCTAGAGACACTGCTCCAAGTCACCGACAATTTCTCTGAGGACAAGAGAATCGGAATTGGCAGCTTCGGTTCAGTGTATTACGCAACTTTAGAGGATGGAAAAGAGGTTGCTATAAAAAGAGCGGAAGCCTCATCCTCCTCCTACGCAGTTTTGGGTGGCCAAGTGGACAAAGACAATGCCTTTGTGAATGAGCTTGAATCtctctcaagactccaccacaagaaccttgtacgcttgctggggttctatgaagacaccaaagaacgcattttggtttacgagtacatgaacaacggcagcctcactgatcatcttcacaagcttcaaacttcagctcttatgtcatggccaatgcgcatcaaagtggctctagacgcagctagaggcatagagtatctacatcgatatgccaacccaccaattattcaccgtgacatcaaatctgccaacatattattggatgccaagtggactgccaaagtctctgattttggactctcattaatgggcccTGACCCAGAAGACGAGGAGGCCCACCTTTCTCTTCTGGCTGCTGGCACTGTTGGCTACATGGACCCTGAGTACTATAGGCTTCAGCATTTGACCTCCAAGAGTGATGTCTATAGTTTTGGTGTGGTTTTGTTAGAGTTGCTCTCTGGCTACAAAGCCATTCATAAAAACGAAAATGGGGTGCCAAGAAATGTGGTTGATTTTGTGGTGCCATTCATTGTTCAAGATGAGGTTCACAGGGTTTTGGACACAAGAGTTCCCCCACCCACACCTTTTGAGATAGAGGCTGTGGCGTTTGTGGCTTATTTGGCAACAGATTGTGTTAGACTAGAAGGAAGAGATAGACCAAGTATGTCTCAAGTTGTAAATAACTTGGAAAGAGCATTGGCTGCATGTTTAGCCCAACCAATACTCTCAAGCTCCAACACTCATTCTTCACAATAG 2262 0.3912 MAPFPLNLLILLFSLPSIYTLSTVSISQTSNSTQTLICVLQHPNQQAQSNLNCTTFPQTQPITLQLNHNVSYSQIVGGDGYVCALGPSSSSTSIMGCWRFSSNATNVPYKRIYHGPLVQQIDGGNSHVCGLVNNSLSLGLGLECWQWHGFNSSTARDMSMTMASVAVGEDFVCVLSQRGEVNCTGTSSSSVIVDVPAHGGNYTFVAAGFRHACAISFDGSLHCWGDMEGEIPQGRFFSLALGENRSCALGYDRIVLCWGSNNFIMPPRLQDTFFESIVAKRSVFCGVVSSNNSLLCWGSEFFESNAKVFDDVLPGPCRSQCPCGPLLNSAKLCPSPDIICQPCSPQVAQSPPQPPNNNTGWSRKMVAFLVVGCVGCSSLLLVMAFFLYRYCNSNRRASRVHDSDRLDGSQPVSRVLQKRLSHVISMGNGSPLEEFSLETLLQVTDNFSEDKRIGIGSFGSVYYATLEDGKEVAIKRAEASSSSYAVLGGQVDKDNAFVNELESLSRLHHKNLVRLLGFYEDTKERILVYEYMNNGSLTDHLHKLQTSALMSWPMRIKVALDAARGIEYLHRYANPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPDPEDEEAHLSLLAAGTVGYMDPEYYRLQHLTSKSDVYSFGVVLLELLSGYKAIHKNENGVPRNVVDFVVPFIVQDEVHRVLDTRVPPPTPFEIEAVAFVAYLATDCVRLEGRDRPSMSQVVNNLERALAACLAQPILSSSNTHSSQ 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00029 753 ProSiteProfiles Protein kinase domain profile. 447 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00029 753 Pfam Protein kinase domain 448 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00029 753 Pfam Regulator of chromosome condensation (RCC1) repeat 205 226 - -
Cca04g00029 753 SMART serkin_6 447 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00029 753 Gene3D - 144 321 IPR009091 -
Cca04g00029 753 Gene3D Phosphorylase Kinase; domain 1 421 531 - -
Cca04g00029 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672|GO:0006468
Cca04g00029 753 CDD STKc_IRAK 453 733 - -
Cca04g00029 753 SUPERFAMILY RCC1/BLIP-II 109 300 IPR009091 -
Cca04g00029 753 PANTHER OJ000114_01.11 PROTEIN 15 740 - -
Cca04g00029 753 ProSitePatterns Protein kinases ATP-binding region signature. 453 475 IPR017441 GO:0005524
Cca04g00029 753 Gene3D Transferase(Phosphotransferase) domain 1 532 741 - -
Cca04g00029 753 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 15 740 IPR044815 GO:0004674
Cca04g00029 753 SUPERFAMILY Protein kinase-like (PK-like) 422 731 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00029 Cca-Chr4 308392 311135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00029 19 750 Receptor kinase-like Gene Family AT5G47850 50.928 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca04g00029 Pkinase 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00029 - - pvu:PHAVU_011G003100g 1218.37