Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00027 ATGGACTTGTGGTCTCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACTGAGAGACAGTTCCAAGCCACATATGGAAAACCGCTTTTAGCTGCAAGAGATCCTAAATGCTCCGCGAAGGATGCTGAAGCAGGAGCTCTTGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGGACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCTTGTACAACTCAAACTTTACGAACAGTATTCTGGTTCCCGTGTAAAACAAGAAGTGTCATCTATTGTGACAACAAATGAATCTGCAGCAGCAGAAGGAAGCAGTGGTTCTACTAAAGCTTCTTCACATGTTTTCCAGGCGCTTCAATACTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTGTCTAGCATCCTCTCAGGAGTGTTTCCTGCTGGCTCTGATGTTATTTCAGAACTTCACAAACTCTGTCACTCTCCAAAATTGGTTGCTCTTCAGGAGATTCTTGAAGAATGTGGAATTGGAGTTGATAATTCATGTTCTGAGGGTGCGGTTAACATTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCATACACACATGAAAAGTGTTACATATTTGCGGTTAGATGGATCAGTTGAGCCAGAAAAGCGCTTTGAAATTGTCAAAGCTTTCAATTCTGACCCTACCATCGATGTCTTACTGCTTACAACACATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCGATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAGGTAGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTGCAAAGGTTCAAAGTGTCGGTGGCTAATGCTGTCATTAATTCGGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAGACGTCGAAGAAGGGGGCATCTGTTGCGAAGAGTTCAGAGAACTCTGATGGAGACGCTAAATTAGTAGGCAGTGGAAAGGGATTGAAATCAATACTTGGAGGATTGGAGGAGCTTTGGGACCAATCACAATATACGGAGGAGTACAACCTGAATCAATTTTTAGCAAGGCTTAATGGCTAG 1281 0.4215 MDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSLVQLKLYEQYSGSRVKQEVSSIVTTNESAAAEGSSGSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLSSILSGVFPAGSDVISELHKLCHSPKLVALQEILEECGIGVDNSCSEGAVNIGQHRVLIFAQHKAFLDIIERDLFHTHMKSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENASMKTMNTDQLLDLFASAETSKKGASVAKSSENSDGDAKLVGSGKGLKSILGGLEELWDQSQYTEEYNLNQFLARLNG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00027 426 Pfam Helicase conserved C-terminal domain 209 309 IPR001650 -
Cca04g00027 426 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 199 355 IPR001650 -
Cca04g00027 426 CDD SF2_C_SNF 178 320 - -
Cca04g00027 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 365 IPR027417 -
Cca04g00027 426 Gene3D - 73 388 IPR027417 -
Cca04g00027 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 63 IPR027417 -
Cca04g00027 426 Gene3D - 1 62 IPR038718 -
Cca04g00027 426 PANTHER SNF2/RAD54 HELICASE FAMILY 1 423 - -
Cca04g00027 426 SMART helicmild6 223 309 IPR001650 -
Cca04g00027 426 Pfam SNF2-related domain 2 145 IPR000330 GO:0005524|GO:0140658
Cca04g00027 426 PANTHER B-TFIID TATA-BOX-BINDING PROTEIN-ASSOCIATED FACTOR 1 1 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00027 Cca-Chr4 296448 300220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00027 178 352 RAD5 or RAD16-like Gene Family AT5G22750 33.523 6.57e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca04g00027 SNF2_N 1.7e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00027 K15192 - gmx:100777977 773.081