Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00016 atggtcgttGGTTTCAAAGTTTGCCGGTATCTATTTGTTAGATGTGACAATGAACCCGCCCCGTGGACAAGCGATGATCATGGAGATAGGCCCAGACCCTTGCCCGTAATTCGTGAACTGAAAAAGGCTACAGTCATATTTGAAAGGACTGAGACTCCATCTTGGGATTTTGATGAGGAAGATTCTCTTTGGAAGTGGAAGAAACCACCACCTCCCAGCAGACAAAAGGTACGAAATGCCGAACCCGTAGAGGTAGCAAGGGAAAAGTCAAATAAAGATATAAGGAAATTCCAACTCAAGTCAATCAAGGAACAATTGCAGAGAGGGTTCTCGTGCATGATATGTGGAGGGGTTATGGTTTCACCAGTGACAACACCGTGTGCTCATAACTTTTGTAAGTCTTGTTTGGAAGGTGCATTTGCTGGTCAGACTTTTGTGAGGGAGAGAAGTAGGGGTGGGAGAACCCTTCGGTCCCAAAAGAATGTGATGAAATGTCCTTCTTGCACTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATGTAGATTTGAAGAGTGCGATTGAATCATTGAAAGCCAAGGTTGAAGAAATTGGAGAATCAGTGGAGTCAAGTGAGAATGCTGATGAGTTACAGGATGATGGCGCTGGCAAGGACGAAGATACTGACTCAGGGAACAAAAATTCTGAAGAGGATTTGAATGGTCTACATGAAGGATCTGATGTTGGTGAGCTTAAAGATGCCAACAAGGGGCCAGATCTAGCAGTGAAGTGCAATGCAAAGAGAAAGAAAGGGGATTGTGGAAAAGAATCGCCTGCTGATAAAATGATGGAAAAAAGAGGTAAAAAATACAGAAAGACTGAGGAAGCAGATGAACAATACTCCAGTTTTCAAAGTTCTGATACATGGAAAGAGGAGCATCATAAGCAGCCTTTTGCTTTCACATCTTTTCACGCGGTTAGGGTGAATGGTGATATGCTGTTTCTTCCTACTAGCAGGTGCTATTACATGGTTTCTTCCACGGTGGCGCCGTGGGTTTTTGTTTATGGAGTAGTTAACTGGTTTTCAAGTTCTATCCCTCTTATGCTTTGTTTGTGTACACCTGTTCTTGCTCGCTACCCTTCTGGGATATGTTGCTGCATGCAAGGGCAgaggagggaagagaaggaggaggaggaggaagagatagagatggaggaCATTGAGGATTTGCTGATTGGGAGCAGCCGAAGTGAAGCTCCACCAGGATTTCGTTTGCCATTAGCAGCTGCTGTTGGCGTCGGCGTTGGAACTAAGCGGAATCAACTCTCTTCTTCTTTACCTTCGCCTGCGATCCCTGGCACTCAGACTATCTACATCAAGACCTTTGGCTGCTCGCATAACCAGAGCGACAGCGAATACATGGCTGGTCAGCTTTCGGCTTTTGGTTACTCTTTGAGCGATAATCCCGACCTAGCAGATCTCTGGCTCATTAACACTTGCACAGTTAAATCCCCGAGTCAATCTGCTATGGATACCATCATATCAAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGAGATTTGAAAGAGCTCGAAGGGATCAGCGTTGTTGGAGTTCAGCAAATTGATCGTGTTGTTGAAGTTGTAGAGGAGACTTTAAAAGGTCACGAAGTGCGCCTCTTTACACGAAAGAAATTGCCAGCACTGGACCTCCCTAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATCAATGTTGGTTGTTTAGGTGCTTGTACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTACACAGTTGATAGCCTTGTTGGGCGTGTAAAATCTGTCATATCTGATGGAGTTAAAGAGATATGGCTTAGCAGTGAGGACACTGGAGCATATGGTCGTGACATTGGTGTCAATCTTCCAACTTTGTTGAAGGCCTTAGTAGCAGAACTACCAGCTGATGCAAGCACAATGCTGCGTATTGGAATGACCAATCCACCTTATATCCTTGAGCACTTGAAAGAGATAGCAGAGATATTACGCCATCCATGTGTGTACTCTTTTCTGCATGTACCAGTTCAGTCTGGAAGTGATACTATTTTGAGCGCAATGAATCGGGAATATACTGTGAGTGAGTTCAGGACTGTTGTAGATACTTTAACTGAGCTTGTACCAGAGATGGAGATTGCCACTGATATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTGTGCAAACTGTTAACCTTGTTAAAGAGTACAAGTTCCCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGTATGTGA 2346 0.4254 MVVGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVIRELKKATVIFERTETPSWDFDEEDSLWKWKKPPPPSRQKVRNAEPVEVAREKSNKDIRKFQLKSIKEQLQRGFSCMICGGVMVSPVTTPCAHNFCKSCLEGAFAGQTFVRERSRGGRTLRSQKNVMKCPSCTIDISDYLQNIQVDVDLKSAIESLKAKVEEIGESVESSENADELQDDGAGKDEDTDSGNKNSEEDLNGLHEGSDVGELKDANKGPDLAVKCNAKRKKGDCGKESPADKMMEKRGKKYRKTEEADEQYSSFQSSDTWKEEHHKQPFAFTSFHAVRVNGDMLFLPTSRCYYMVSSTVAPWVFVYGVVNWFSSSIPLMLCLCTPVLARYPSGICCCMQGQRREEKEEEEEEIEMEDIEDLLIGSSRSEAPPGFRLPLAAAVGVGVGTKRNQLSSSLPSPAIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPDLADLWLINTCTVKSPSQSAMDTIISKGKSSNKPLVVAGCVPQGSRDLKELEGISVVGVQQIDRVVEVVEETLKGHEVRLFTRKKLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVKSVISDGVKEIWLSSEDTGAYGRDIGVNLPTLLKALVAELPADASTMLRIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMEIATDIICGFPGETDEDFVQTVNLVKEYKFPQVHISQFYPRPGM 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00016 781 ProSitePatterns Methylthiotransferase radical SAM domain signature. 587 607 IPR020612 GO:0051539
Cca04g00016 781 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 450 558 IPR013848 GO:0035596|GO:0051539
Cca04g00016 781 Gene3D tm_1862 like domain 581 781 IPR023404 -
Cca04g00016 781 Gene3D - 2 51 IPR036987 -
Cca04g00016 781 Pfam Radical SAM superfamily 590 762 IPR007197 GO:0003824|GO:0051536
Cca04g00016 781 Pfam RING-type zinc-finger 112 166 IPR027370 -
Cca04g00016 781 Coils Coil 385 405 - -
Cca04g00016 781 ProSitePatterns Zinc finger RING-type signature. 127 136 IPR017907 -
Cca04g00016 781 SMART MiaB 583 781 IPR006638 GO:0003824|GO:0051536
Cca04g00016 781 MobiDBLite consensus disorder prediction 199 249 - -
Cca04g00016 781 SFLD Radical SAM 528 780 IPR007197 GO:0003824|GO:0051536
Cca04g00016 781 MobiDBLite consensus disorder prediction 203 218 - -
Cca04g00016 781 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 452 780 IPR006466 GO:0035598|GO:0035600
Cca04g00016 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 214 IPR013083 -
Cca04g00016 781 ProSiteProfiles Zinc finger RING-type profile. 112 169 IPR001841 -
Cca04g00016 781 Gene3D - 451 571 IPR038135 -
Cca04g00016 781 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 451 780 IPR005839 GO:0006400|GO:0016740|GO:0051539
Cca04g00016 781 SUPERFAMILY Radical SAM enzymes 572 780 - -
Cca04g00016 781 PANTHER RADICAL SAM PROTEINS 399 780 - -
Cca04g00016 781 Pfam Uncharacterized protein family UPF0004 452 530 IPR013848 GO:0035596|GO:0051539
Cca04g00016 781 SUPERFAMILY RING/U-box 104 193 - -
Cca04g00016 781 SMART ring_2 112 168 IPR001841 -
Cca04g00016 781 MobiDBLite consensus disorder prediction 262 292 - -
Cca04g00016 781 Coils Coil 189 209 - -
Cca04g00016 781 MobiDBLite consensus disorder prediction 219 249 - -
Cca04g00016 781 SFLD B12-binding domain containing 528 780 - -
Cca04g00016 781 ProSiteProfiles Radical SAM core domain profile. 579 781 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00016 Cca-Chr4 189329 209131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00016 5 203 C2H2 Transcription Factor Family AT5G39550 55.779 5.14e-67 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00016 K15865 - gmx:100798865 713.761