Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00010 ATGACATCAAAAAATCCTCATGAGATAATGGACGATGAGGGATTTGATTGGGAAGCAGCTGCTAGAGAAATCGACGTCGTTTGCCAACTGACCAGTGTTACAAAGGAAAAAGGAAAGGGAAAAGTATATGAGAAAAGAAAGCAATCCACTCTCGATGAGTTCGTGTCTATTGGCAAGAAGGAAACCCCAATACCGCAGTTCGAAGACGATGACGGCGGCCCTACTTTCGTCCACCAGATTGATGCGGAGGCGGCCAAAACTTGGACATATCCCGTTAATGTTCCTCTCCGTGACTATCAATTTGGTATTACCCAGTCCGCACTCTTTTCAAACACATTGGTGGCCCTGCCAACAGGACTTGGCAAAACACTCATCGCCGCGGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAGGGCAAAATAGTCTTTGCTGCTCCTTCTCGGCCACTTGTCATGCAGCAGATTGAAGCATGCCACAATATTGTGGGAATACCTCAAGAATGGACAGTTGATATGACTGGTCAGATAAGTCCTCCCAAAAGAGCCCAGTTTTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTGTTGGAGAAGGATATTCATTCTGGTACATGTTTAGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGGAATTATGCATATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCAGTACAGCTGAGAATATTAGCATTAACTGCAACGCCGGGATCAAAGCAGCAGACAATCCAGGCTGTCATTGATAATCTGCATATCTCCAGACTTGAATATCGCAGCGAAACTGACCATGACGTTATCACATATGTTCACAACAGGAAGATAGAGTTGATACAGGTTGTTGCAATGGGCCCAGATGCTGTAGAAATAAACAATAAGTTTATGGAAGTAATACGCCCTATAGTAGCCAGGCTTACAAATGTTGGGGTCATTCAGAACAGAGATTACCGCACTTTGAGCCCTTGTCAATTACTTGAAATAAGGGAAAAGTTTCGTCAGCGGCCTAAGCAAGATCTTTCTCATGTCAACTATGAAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCATAAGCTACTCTCAAGTCACGGAATAAGGCCAGCATATGAGATGCTTGAGAGAAAATTGAAGCAAGGATATTTTGCAAAATTTATGAGTAAAAATGAAGTTATTCTGAAAGCAAGGCAGCTAATGCAGCAAAGTTTGTCTCACGGAGCATCAAGTCCAAAATTGACCAAAATGCTAGAAGTATTACTGGGGCATTTCAAAACCAATGATCCGCAAAACTCCAGGGTAATTATCTTCTCCAATTACAGAGAAAGTGTCAGGGATATAATGGATGCACTTGGAGATATTGGGGAATTAGTCAGAGCTACTGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCTGGCACCTATAATGTCATTGTTGCTACGTCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACAGGGAGAAAGCATGATGGACGAATTCCCCATGTCCTTAAACCAGAAGTTCAATATGTAGAGTTGTCCATTGAAAAATTTATTCCTCGTCAACAGAATTTGAAAGACGATGAATTCCACACTTCTCCATCAAAGGACAAACTCACTGTTGCTGAAATTGATTTTCTTGAAACATATTTTGTCCCTACTGGGGAAAACAATTGCAGAATGTCTCTTATTGCCTTTCCCCATTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTGAAGCATTCCCCTGGAACATTGATGCTTATAGACATCATGCAGCGTTTGCAAGGACTAGTATCATTTCCGGAAGATGACAAAACTTCTTCACTCCAGGAAGCTCTGTGTTTGGGACCAAGTAAGCCAGTCGCCACTACCAAACTTGATGAAGATAAAAAAGACAATGAATCATGCTCTAGGCATACAATGAGAAGTAATGTAATCTCTGTTAATTGTCTGGAGCTGGATTGCTGTCATTCTGGGATTCAAAGCAAAGACTTCATCGATATAACTCCACAAGATGGTACTTTCAGTGACTTGAGTAAGGATCAAGAGGAAACATGTGAGGGCGATGAGACAATTCCTGAGACTCCAATTGCTAAGAGAAGCGTGTCCAATAAAGGAGATAATGCTGGTCAAATGGTAAATCTTGTGGAGATTGAGATTTCTTCGTTGGTTGCAGATGCTTGCATTAATGGCATGAAAGATGAAGAACTCAGTCCACGTTTAACTAATTTTATTAGAAGTGGTGTTGTTCCAGAGTCTCCCGTTGATGAAAGAGGGAAATCAAGATTCAATTCTGTCATACACGAGTGTATGTTACCTGTTCATCTCCACCAAGAACAGGATGTTAGTTCTTTAAGCCCTTGGGAAACTGAAAAGGTCCTCATTGATAGAGGCACCAATAAGAATGCCTGTACTTCTCCTGTTGTTAATGAAACTCAAACCTCTTTACTTGAGCTCAAGAATCGTGCAATTAGAAGAGGTCTAGTCTTCCTTTCTCAAACTGAGGAAGGCCATGTACATAACACTGACCCAAGCTTCAGTGATGAAGCACTTCCAGATTGTGGTGAAATGTCTGAAAGCATTAAACCTGCACGCAAATTTAAAAGGTTGCGGAAAGCTGAAGATACTGAAAGTAATATAAATCATAAAAACAATAAAATTTTTGCTTCAACAGCAAACTTTCTCAAATCATCTTCTGCCTCAAATCCTGCACGATATAAGCATGGCCAAGGTGAAAGGAAATCAACACACAATGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTATCTTTAGATTCCTTTGTATCTAATGATGAAGATGACGAGGATGGCAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACGGCAGCTAGTCAGCTTGAAGCTAGCAGATTGGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAAACACCGAGTAATGGAGGGCTTGGTTTTTCTGCCACCTTCACTCCTGACTCTGTGACTATGGCAGCCAGTATTAGTGAAAGTGAGGATTCTTCTGGGAAGACAGTGAATCATCTCCATACAGAGCCAACCAAACAGTCAGTTAATCCGACATCAGAATCTGTTAGTATCGAGCAGATAACCTCAGAAGCAGTGCCTTCAACTTGTTCTCCTACGGGAACTGGGACAGAGATAAGAAGTCGCAAACGAAGACTGTCATTTTACCATTCTGGACACTTCCCAAATATGAACCTTGACCGAGAATTTGCACTTCAATCAAAAAAAGAAACAGTGGATGCCGATGTAATTGTAACTACAGATGTTCTATATGATGATCAATTTTATAATGACCTTGATCTTGATGAGTTGGAGGCTCAAGCAACTTCACTTCTAAAACGGAAATTAGATTTGTCAATTCAGAAGCAAGATACTGTCCCTCAATCTCACACACCCAACCTTGATATTTTTCGGTCTCCGTCATTTGACCTTGGGATAGAAAGGCATGACATAAGCACTGATGCTGCACGGCACTTGCATTCTGGAAATTGA 3705 0.4113 MTSKNPHEIMDDEGFDWEAAAREIDVVCQLTSVTKEKGKGKVYEKRKQSTLDEFVSIGKKETPIPQFEDDDGGPTFVHQIDAEAAKTWTYPVNVPLRDYQFGITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQISPPKRAQFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVRELMAVPVQLRILALTATPGSKQQTIQAVIDNLHISRLEYRSETDHDVITYVHNRKIELIQVVAMGPDAVEINNKFMEVIRPIVARLTNVGVIQNRDYRTLSPCQLLEIREKFRQRPKQDLSHVNYEDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGYFAKFMSKNEVILKARQLMQQSLSHGASSPKLTKMLEVLLGHFKTNDPQNSRVIIFSNYRESVRDIMDALGDIGELVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRIPHVLKPEVQYVELSIEKFIPRQQNLKDDEFHTSPSKDKLTVAEIDFLETYFVPTGENNCRMSLIAFPHFQTFPSRVHKVKHSPGTLMLIDIMQRLQGLVSFPEDDKTSSLQEALCLGPSKPVATTKLDEDKKDNESCSRHTMRSNVISVNCLELDCCHSGIQSKDFIDITPQDGTFSDLSKDQEETCEGDETIPETPIAKRSVSNKGDNAGQMVNLVEIEISSLVADACINGMKDEELSPRLTNFIRSGVVPESPVDERGKSRFNSVIHECMLPVHLHQEQDVSSLSPWETEKVLIDRGTNKNACTSPVVNETQTSLLELKNRAIRRGLVFLSQTEEGHVHNTDPSFSDEALPDCGEMSESIKPARKFKRLRKAEDTESNINHKNNKIFASTANFLKSSSASNPARYKHGQGERKSTHNVRDFIEEEAEVSLDSFVSNDEDDEDGNSFDSFIDDRTNPTAASQLEASRLDMMAIYRRSLLSQTPSNGGLGFSATFTPDSVTMAASISESEDSSGKTVNHLHTEPTKQSVNPTSESVSIEQITSEAVPSTCSPTGTGTEIRSRKRRLSFYHSGHFPNMNLDREFALQSKKETVDADVIVTTDVLYDDQFYNDLDLDELEAQATSLLKRKLDLSIQKQDTVPQSHTPNLDIFRSPSFDLGIERHDISTDAARHLHSGN 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00010 1234 Pfam Type III restriction enzyme, res subunit 110 253 IPR006935 GO:0003677|GO:0005524|GO:0016787
Cca04g00010 1234 MobiDBLite consensus disorder prediction 991 1006 - -
Cca04g00010 1234 PANTHER FANCONI ANEMIA GROUP M PROTEIN 558 1182 IPR039686 GO:0006281|GO:0043138
Cca04g00010 1234 MobiDBLite consensus disorder prediction 958 977 - -
Cca04g00010 1234 MobiDBLite consensus disorder prediction 991 1013 - -
Cca04g00010 1234 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 14 558 - -
Cca04g00010 1234 Pfam Helicase conserved C-terminal domain 438 553 IPR001650 -
Cca04g00010 1234 SMART ultradead3 92 292 IPR014001 -
Cca04g00010 1234 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 430 596 IPR001650 -
Cca04g00010 1234 CDD FANCM_ID 304 418 - -
Cca04g00010 1234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 558 IPR027417 -
Cca04g00010 1234 MobiDBLite consensus disorder prediction 1063 1091 - -
Cca04g00010 1234 SMART helicmild6 464 554 IPR001650 -
Cca04g00010 1234 MobiDBLite consensus disorder prediction 1096 1115 - -
Cca04g00010 1234 Coils Coil 1172 1192 - -
Cca04g00010 1234 CDD SF2_C_FANCM_Hef 428 558 - -
Cca04g00010 1234 Gene3D hef helicase domain 301 422 - -
Cca04g00010 1234 Gene3D - 423 578 IPR027417 -
Cca04g00010 1234 Gene3D - 92 286 IPR027417 -
Cca04g00010 1234 CDD DEXDc_FANCM 94 275 IPR044749 GO:0005524
Cca04g00010 1234 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 271 IPR014001 -
Cca04g00010 1234 PANTHER FANCONI ANEMIA GROUP M PROTEIN 14 558 IPR039686 GO:0006281|GO:0043138
Cca04g00010 1234 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 558 1182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00010 Cca-Chr4 113252 134772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00010 385 552 Eukaryotic Initiation Factors Gene Family AT3G13920 26.374 1.36e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00010 K10896 - gmx:100820078 1779.99