Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00006 ATGTCTATCTCTGGCCGTCCAACAGAGCAGGTGACCATGGGAGGATTACGAATATCATCACTGAATTTGACACCAACTACATTGGCTATCAGTACTGTGGTTGCTACTTTGCTGATATGGTGGTTTTGGAACGCGCTCAACTGGGTTTGGCTGAGACCAAAGAGGTTAGAGAGGCGTCTCAAGGAGCAGGGTCTCCAAGGCAATTCCTACCGCCCTTTGGTTGGAGACATCAGAGATATGGTTAAAATGACTAAGGAAGCCAAATCCAAACCCATGGATCCTCACTCTAATGACATTGCTCCCCGTGTATTGCCTTACGTTGTCCACACCATCGCTAAATACGGTAAGAATTCATTTATGTGGCTTGGTCCAAGACCAAGACTATTCATCTTGGATCCAGACAAATTCAAAGAAATTGCTACTAAGGTCTATGAATTTCAAAAGCCCGAAACTAGTCCACTTTTCAAGCTTCTAGCATCAGGATTTGCAAATTACGATGGCGACAAGTGGGCTAAACACAGAAAGATCGTGAGTCCAGCATTCAATGTAGAGAAATTGAAGCTCTTGGTACCAATATTTTGCCAGAGTTGCGATGATTTGATCAGCAAATTGGACAGTTTGTTATCTTCGTCTAATGGGTCCTGTGAGTTAGATGTGTGGCCTTTGGTCCAAAACGTGTCAAGCGACGTCCTTGCTCGTGCAGGCTTTGGAAGTAGCTATGAAGAAGGAAGGAAAGTATTCGAACTTCAAAGGGAAATGCTTCAACATACTATGACGCTCTTTAAGTTTGCTTTCATTCCAGGTTACAGGTTTCTGCCAACGCGTACCAACAGGAGGATGAAAGCAATTGACGAAGAAATACGAGCATCACTTATGGGTATCATCAACCGAAGGTTAAAAGCAATCAAAGCAGGGGAGCCTACTAACAATGACTTGTTGGGCATACTCTTGGAATCAAATTACAAGGAATCTGAAAAAAGAAGTGGTGGAGGAATGAGTTTAAGGGAAGTAGTGGAAGAAGTCAAGCTATTTTATTTGGCAGGGCAGGAGGCGAATGCGGAATTGCTGGTCTGGACTTTGTTATTATTAGGCAAGCATCCTGATTGGCAAGAAAAGGCGAGGGAGGAGGTTTTCAAAGTGTTCGGTAATGAAAAGCCAGATTATGATAGGCTAGGTCAACTTAAAATTGTGTCAATGATTCTGCAGGAGAGTCTCAGATTATATCCACCAGTAGTTATGTTCTCTCGGTATCTTCGAAAAGATACGAAACTTGGAGACCTTACAATTCCCGCTGGAGTGGAGCTTGTAGTACCTGTGTCAATGCTACACCAGGCTAAGGAGTTTTGGGGCGATGATGCCGGGGAATTCAAACCAGAAAGATTCTCAGAAGGAGTCTCAAAGGCAACAAGAGGCAAACTTTCATACTTGCCATTTGGATGGGGCCCTCGACTCTGCATAGGACAAAATTTTGGCTTGTTAGAAGCAAAAGTAGCCGTGTCAATGATCCTGCAACGTTTCTCCATCGAGTTCTCCCCGTCCTATGCTCATGCGCCGTCCTTTATTATTACTCTACAGCCTGAGCGTGGGGCTCATCTCATTTTACACAAACTGTAG 1614 0.4405 MSISGRPTEQVTMGGLRISSLNLTPTTLAISTVVATLLIWWFWNALNWVWLRPKRLERRLKEQGLQGNSYRPLVGDIRDMVKMTKEAKSKPMDPHSNDIAPRVLPYVVHTIAKYGKNSFMWLGPRPRLFILDPDKFKEIATKVYEFQKPETSPLFKLLASGFANYDGDKWAKHRKIVSPAFNVEKLKLLVPIFCQSCDDLISKLDSLLSSSNGSCELDVWPLVQNVSSDVLARAGFGSSYEEGRKVFELQREMLQHTMTLFKFAFIPGYRFLPTRTNRRMKAIDEEIRASLMGIINRRLKAIKAGEPTNNDLLGILLESNYKESEKRSGGGMSLREVVEEVKLFYLAGQEANAELLVWTLLLLGKHPDWQEKAREEVFKVFGNEKPDYDRLGQLKIVSMILQESLRLYPPVVMFSRYLRKDTKLGDLTIPAGVELVVPVSMLHQAKEFWGDDAGEFKPERFSEGVSKATRGKLSYLPFGWGPRLCIGQNFGLLEAKVAVSMILQRFSIEFSPSYAHAPSFIITLQPERGAHLILHKL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00006 537 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 478 487 IPR017972 GO:0005506|GO:0016705
Cca04g00006 537 PANTHER CYTOCHROME P450 FAMILY MEMBER 7 535 - -
Cca04g00006 537 PRINTS P450 superfamily signature 347 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 PRINTS P450 superfamily signature 399 410 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 PRINTS P450 superfamily signature 476 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 PRINTS P450 superfamily signature 485 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 Pfam Cytochrome P450 112 521 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 PRINTS E-class P450 group I signature 111 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 PRINTS E-class P450 group I signature 226 244 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 PRINTS E-class P450 group I signature 356 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 PRINTS E-class P450 group I signature 475 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 PRINTS E-class P450 group I signature 485 508 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 7 535 - -
Cca04g00006 537 SUPERFAMILY Cytochrome P450 102 535 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00006 537 Gene3D Cytochrome P450 49 537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00006 Cca-Chr4 70290 73683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00006 21 537 Cytochrome P450 AT3G14690 52.611 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00006 - K24179 gmx:100801959 954.896