Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03235 ATGTGTGGAGGGGCTATTATCTCTGACTTCATTCCAGCGGCGGTGACGGACACCTCTCGCCGTCTCACCGCCAATTACCTGTGGCCCGATTTGAAGAAGCGGACCTCACGGAAATCTGATTTGGACGATGACTTTGAGGCTGATTTCAGGGAATTTAAAGACGATTCCGACTTCGACATCGACGACGACGACAAACCCTTTGCTTTCGCTGCCTCCTCTCGTCGGTCTCCGGCTGCAAAATCTGTGGCATTCAAAGGTCGAGCTGAGAAGTGTGCAAAGAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAACGTCCGTGGGGAAAATGGGCTGCTGAGATCCGGGATCCAAGAAAGGGGGTTCGTGTCTGGCTGGGAACCTTCAACACTGCAGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCCGAGGAGGCACCAGGTTCTTCTGTAAAACGTTCCAAGGTAAATCCACAGGAGTATCGGAAGACAGTTCAGCCAAATCTGAGTCACAAGTTCAATGCTGGCAAAAATTACGAAGACTATTGTTGTCCTATGGATCTGGTGGAACAGAAACCCGTAGTTAGCCAGTATGCTAACATGGGTTCCTTCCATGGCAGTGGAAATGAGCTCACATCCCTTGCTTCTTCTGATGATGTGACCCTTTACTTCAGTTCAGATCAGTTGTGTAACTCATTTGATTATGCAGATCTTGGGTCGAGTGAACAAGGCCCCAAGACTCCTGAGATACCATCCATACTTTCTGCTCCTCTGGGTTGTGAATCTCATCTTGTACATGACGCCAACCTGCAGAATAACATGCAGACCAACTCTCAGGATGTGGTATCTATGCAAGATAATTCTGCAAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTCAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAACTGGGATGATACTTCATTGGACTCCTTTCTGTCTTGTGACACAACTCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA 1098 0.4781 MCGGAIISDFIPAAVTDTSRRLTANYLWPDLKKRTSRKSDLDDDFEADFREFKDDSDFDIDDDDKPFAFAASSRRSPAAKSVAFKGRAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPGSSVKRSKVNPQEYRKTVQPNLSHKFNAGKNYEDYCCPMDLVEQKPVVSQYANMGSFHGSGNELTSLASSDDVTLYFSSDQLCNSFDYADLGSSEQGPKTPEIPSILSAPLGCESHLVHDANLQNNMQTNSQDVVSMQDNSAKTLSEELVDIESQLKFFQMPYLEGNWDDTSLDSFLSCDTTQDGGNLMNLWSFDDIPSMAGGVF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03235 365 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Cca03g03235 365 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Cca03g03235 365 PANTHER DNA-BINDING DOMAIN 1 359 IPR044808 GO:0003700|GO:0009873
Cca03g03235 365 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Cca03g03235 365 PANTHER EREBP TRANSCRIPTION FACTOR 1 359 - -
Cca03g03235 365 Gene3D AP2/ERF domain 98 157 IPR036955 GO:0003700|GO:0006355
Cca03g03235 365 SUPERFAMILY DNA-binding domain 99 157 IPR016177 GO:0003677
Cca03g03235 365 SMART rav1_2 99 162 IPR001471 GO:0003700|GO:0006355
Cca03g03235 365 ProSiteProfiles AP2/ERF domain profile. 99 156 IPR001471 GO:0003700|GO:0006355
Cca03g03235 365 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03235 Cca-Chr3 53715469 53717926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03235 1 365 AP2-EREBP Transcription Factor Family AT1G53910 46.482 2.48e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g03235 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03235 K09286 - gmx:100170723 505.368