Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g03235 | ATGTGTGGAGGGGCTATTATCTCTGACTTCATTCCAGCGGCGGTGACGGACACCTCTCGCCGTCTCACCGCCAATTACCTGTGGCCCGATTTGAAGAAGCGGACCTCACGGAAATCTGATTTGGACGATGACTTTGAGGCTGATTTCAGGGAATTTAAAGACGATTCCGACTTCGACATCGACGACGACGACAAACCCTTTGCTTTCGCTGCCTCCTCTCGTCGGTCTCCGGCTGCAAAATCTGTGGCATTCAAAGGTCGAGCTGAGAAGTGTGCAAAGAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAACGTCCGTGGGGAAAATGGGCTGCTGAGATCCGGGATCCAAGAAAGGGGGTTCGTGTCTGGCTGGGAACCTTCAACACTGCAGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCCGAGGAGGCACCAGGTTCTTCTGTAAAACGTTCCAAGGTAAATCCACAGGAGTATCGGAAGACAGTTCAGCCAAATCTGAGTCACAAGTTCAATGCTGGCAAAAATTACGAAGACTATTGTTGTCCTATGGATCTGGTGGAACAGAAACCCGTAGTTAGCCAGTATGCTAACATGGGTTCCTTCCATGGCAGTGGAAATGAGCTCACATCCCTTGCTTCTTCTGATGATGTGACCCTTTACTTCAGTTCAGATCAGTTGTGTAACTCATTTGATTATGCAGATCTTGGGTCGAGTGAACAAGGCCCCAAGACTCCTGAGATACCATCCATACTTTCTGCTCCTCTGGGTTGTGAATCTCATCTTGTACATGACGCCAACCTGCAGAATAACATGCAGACCAACTCTCAGGATGTGGTATCTATGCAAGATAATTCTGCAAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTCAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAACTGGGATGATACTTCATTGGACTCCTTTCTGTCTTGTGACACAACTCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA | 1098 | 0.4781 | MCGGAIISDFIPAAVTDTSRRLTANYLWPDLKKRTSRKSDLDDDFEADFREFKDDSDFDIDDDDKPFAFAASSRRSPAAKSVAFKGRAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPGSSVKRSKVNPQEYRKTVQPNLSHKFNAGKNYEDYCCPMDLVEQKPVVSQYANMGSFHGSGNELTSLASSDDVTLYFSSDQLCNSFDYADLGSSEQGPKTPEIPSILSAPLGCESHLVHDANLQNNMQTNSQDVVSMQDNSAKTLSEELVDIESQLKFFQMPYLEGNWDDTSLDSFLSCDTTQDGGNLMNLWSFDDIPSMAGGVF | 365 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g03235 | 365 | PRINTS | Ethylene responsive element binding protein signature | 100 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03235 | 365 | PRINTS | Ethylene responsive element binding protein signature | 122 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03235 | 365 | PANTHER | DNA-BINDING DOMAIN | 1 | 359 | IPR044808 | GO:0003700|GO:0009873 | |
Cca03g03235 | 365 | Pfam | AP2 domain | 99 | 148 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03235 | 365 | PANTHER | EREBP TRANSCRIPTION FACTOR | 1 | 359 | - | - | |
Cca03g03235 | 365 | Gene3D | AP2/ERF domain | 98 | 157 | IPR036955 | GO:0003700|GO:0006355 | |
Cca03g03235 | 365 | SUPERFAMILY | DNA-binding domain | 99 | 157 | IPR016177 | GO:0003677 | |
Cca03g03235 | 365 | SMART | rav1_2 | 99 | 162 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03235 | 365 | ProSiteProfiles | AP2/ERF domain profile. | 99 | 156 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g03235 | 365 | CDD | AP2 | 99 | 157 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g03235 | Cca-Chr3 | 53715469 | 53717926 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g03235 | 1 | 365 | AP2-EREBP Transcription Factor Family | AT1G53910 | 46.482 | 2.48e-67 | 214 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Cca03g03235 | AP2 | 1.8e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g03235 | K09286 | - | gmx:100170723 | 505.368 |