Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03228 ATGAGAGACATGAAAGAAGGCATTTCCAAAACAAATGAGTACTTGTTGAAGAAGAAGGTCTTGTTGAGTCTCTTGGCTACCTTGGTTCTTGCGGGGGCAGTGATTTGCATTGTGGCGGGAGCAAGGTCCCACAACAAGGATGAACCATCTCCTCCGTCCCATGGCATCATCAAAAGCGCTTGCAGCAGCACATTGTACCCGGAGCTCTGCTTTTCATCCATAACCTCCGAACATGAGAACGTGACCAACAAGCTTTTCTCCCACAAAGATGTCATAAACGTGGCACTGGATATTGGGTACAGATTCGTCCATCGCAACTACTTGCTGGTGGAGAAGCTCTTAACACGAAAGAGTCTGAGCAAGAGAGTGAAAACCGCCCTGAACGATTGCTTGGAGACCATTGGCGAAACACTGGACGACATTACCAAAGCGAAGAAGGACCTCCAAGATTACCCATCCCAGACCAAGTCTCTCTATAAGCATGCTGATGACATCAAAACATTCATCAGCTCCGCCGTAACCAACCACGTTACTTGCTTGGACGGCTTCTCTCACAAGTTAGCTGAGAAGCGCTTCAGGAAACTATATCTGCTGAAAGCCCAATTATACGCGCAGTACTTGTGCAGCAATGCGTTGGCTATGGCAAAGAACCTGACTGACACTGACATAGCCATTCACGAgaagagcatgagcatgaaggagaggaagatggtggagaaggaggaGTGGCCGGAGTGGATCTCCGCCGAGGACAAGCGGCTTCTGCAGTCTGATTCGGTGACTCCCAACGTGGTGGTGGCGGCGGACGGCAGCGGGAACTACAAGACAGTATCGGCTGCGGTGGCTGCGGCTCCTTCGAAGAGTAGCAGCAGATACGTGATTAGGATCAAAGCAGGAGTGTACAGAGAGACTGTGGATGTGCCAAGCTCGAAGACTAACATCATGTTGTTGGGAGATGGAAGTAGCAAAACCATCATCACTGCAAGTAAAAATGTAGTCGATGGAGGCACGACCTTCCACTCTGCGACAGTGGCGGTAGTGGGTGACGGGTTCTTGGCGCGAGGCATAACGTTCCAGAATGCAGCAGGGCCGTCAAAAGAGCAAGCAGTGGCCCTAAGAGTTGGAGCAGACCTCTCAGCCTTCTACTTGTGTGGCTTCATAGCGTACCAAGACACTCTCTACGTCCACAGCAATCGCCAGTTCTTCGTCAAATGCTACGTCGCAGGCACAGTGGACTtcatctttggcaactcagctgctgtcttacaagactgcgacatcaacgccaggcgtcccaatccaaaacaaaagaacaccatcaccgcacaaggccgcacTGACGCTAACCAAAACACTGGCATTGTCATCCAAAAAAGTAGGATTAACGCCACCACTGACTTGTATGCTGTCAAAAACACCTTCCAATCGTTTCTCGGCAGGCCTTGGCAGGACCATTCCCGAACTGTCATCATGCAAACCAGTATAAGTGATATCATTGACCCTGCTGGCTGGTTAGAGTGGGATGCCGATTCTCCTTTGGACCCCTTGTATTATGGAGAATATAAGAACACTGGCGCTGGAGCTTCCACCTCCAAGAGGGTTAATTGGAAAGGCTTCAAGGTAATCACTAGTGCTTCCGAGGCACAAAGTTTCACCCCTGGCAATTTCATTTCTGGTTCTAACTGGTTGCCTTCTACTGGCTTTCCTTACTCCCTTGGCCTTTAA 1725 0.4562 MRDMKEGISKTNEYLLKKKVLLSLLATLVLAGAVICIVAGARSHNKDEPSPPSHGIIKSACSSTLYPELCFSSITSEHENVTNKLFSHKDVINVALDIGYRFVHRNYLLVEKLLTRKSLSKRVKTALNDCLETIGETLDDITKAKKDLQDYPSQTKSLYKHADDIKTFISSAVTNHVTCLDGFSHKLAEKRFRKLYLLKAQLYAQYLCSNALAMAKNLTDTDIAIHEKSMSMKERKMVEKEEWPEWISAEDKRLLQSDSVTPNVVVAADGSGNYKTVSAAVAAAPSKSSSRYVIRIKAGVYRETVDVPSSKTNIMLLGDGSSKTIITASKNVVDGGTTFHSATVAVVGDGFLARGITFQNAAGPSKEQAVALRVGADLSAFYLCGFIAYQDTLYVHSNRQFFVKCYVAGTVDFIFGNSAAVLQDCDINARRPNPKQKNTITAQGRTDANQNTGIVIQKSRINATTDLYAVKNTFQSFLGRPWQDHSRTVIMQTSISDIIDPAGWLEWDADSPLDPLYYGEYKNTGAGASTSKRVNWKGFKVITSASEAQSFTPGNFISGSNWLPSTGFPYSLGL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03228 574 CDD PMEI-like_3 59 219 - -
Cca03g03228 574 PANTHER PECTINESTERASE 16 573 - -
Cca03g03228 574 Gene3D - 257 574 IPR012334 -
Cca03g03228 574 SMART PMEI_2 52 214 IPR006501 GO:0004857
Cca03g03228 574 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Cca03g03228 574 ProSitePatterns Pectinesterase signature 1. 288 307 IPR018040 -
Cca03g03228 574 PANTHER PECTINESTERASE 16 573 - -
Cca03g03228 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 220 IPR035513 -
Cca03g03228 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 218 IPR006501 GO:0004857
Cca03g03228 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 219 IPR035513 -
Cca03g03228 574 SUPERFAMILY Pectin lyase-like 261 573 IPR011050 -
Cca03g03228 574 Pfam Pectinesterase 263 559 IPR000070 GO:0030599|GO:0042545
Cca03g03228 574 Pfam Plant invertase/pectin methylesterase inhibitor 56 214 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03228 Cca-Chr3 53658009 53659927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03228 4 574 Carbohydrate Esterase AT3G14310 58.685 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03228 K01051 - pop:7471606 721.465