Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03224 ATGGGTGACTCAAGTGAAAACATGGGAGAATCCCCCGGCGTTGAGTTAACCGGAAAGATAATGAGGCTTTTTGTGGGGCGGCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGCCGCTTCGTCTTTACCTCCGGTCAAGACGGTCCTCTCCGATCCGGTCTCGACCCCTCCGTCCTCGCCTCCCTTCCCGTGTCGGTTTTCGAATCCAAAGACTGGAAGGAGGGTTTGGAATGTGCGGTTTGTCTCTCGGAGGTTGTGGAGGGTGAAAAGACTAGACTTTTGCCTCACTGCAATCATGGGTTTCACGTTGATTGCATTGACATGTGGTTCCAATCCCATGCTACTTGCCCTCTTTGCAGGAACCCCGTTGCCTCTGAACCACACAACTTGGAATCAGAATCTCCCACTTTTCCCACCAACGTCTTGGTTTGGGGGGACAACTCTCAAATAAGTTCCACCGGTGGTGCTTCTGTTGAGGAGGTGGAGCCTGCTTCTCAGCCACCTTCTTCTTCCTCGGTTGGCGATGATACTAATAGACGTCATGGAACTTTGGTGATTGATATACCTAGTGACATCACTTCAACCTCTTTGTCTCCTTCTGATGAGCTCAAATCTCCAATGACTGGAAGACTCAGATCATTGAAGAGGCTTTTGAGCAGGGACAGAAGGTTAAATCCTTGGAGTCCTACTTCTCTAGATGTAGAACAAGCAGGGTCAGGGGGAGGAGGACTCAGCTGA 885 0.4169 MGDSSENMGESPGVELTGKIMRLFVGRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRRFVFTSGQDGPLRSGLDPSVLASLPVSVFESKDWKEGLECAVCLSEVVEGEKTRLLPHCNHGFHVDCIDMWFQSHATCPLCRNPVASEPHNLESESPTFPTNVLVWGDNSQISSTGGASVEEVEPASQPPSSSSVGDDTNRRHGTLVIDIPSDITSTSLSPSDELKSPMTGRLRSLKRLLSRDRRLNPWSPTSLDVEQAGSGGGGLS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03224 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 174 IPR013083 -
Cca03g03224 294 MobiDBLite consensus disorder prediction 237 252 - -
Cca03g03224 294 MobiDBLite consensus disorder prediction 192 227 - -
Cca03g03224 294 SUPERFAMILY RING/U-box 107 175 - -
Cca03g03224 294 SMART ring_2 127 168 IPR001841 -
Cca03g03224 294 CDD RING-H2_EL5_like 126 169 - -
Cca03g03224 294 PANTHER RING-H2 FINGER PROTEIN ATL3 83 284 - -
Cca03g03224 294 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 83 284 IPR044675 -
Cca03g03224 294 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Cca03g03224 294 MobiDBLite consensus disorder prediction 192 294 - -
Cca03g03224 294 Coils Coil 86 88 - -
Cca03g03224 294 Pfam Ring finger domain 126 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03224 Cca-Chr3 53635791 53636740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03224 86 274 C3H Transcription Factor Family AT1G53820 43.830 5.77e-53 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03224 - - ccaj:109796557 421.009